View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_high_29 (Length: 251)

Name: NF1063_high_29
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_high_29
NF1063_high_29
[»] chr4 (6 HSPs)
chr4 (10-251)||(56039307-56039548)
chr4 (28-109)||(31943850-31943929)
chr4 (29-109)||(9579535-9579615)
chr4 (29-109)||(9585230-9585310)
chr4 (10-109)||(29528347-29528447)
chr4 (18-67)||(4325218-4325267)
[»] chr8 (5 HSPs)
chr8 (10-109)||(23448841-23448941)
chr8 (26-109)||(30694188-30694271)
chr8 (28-108)||(9256075-9256155)
chr8 (28-109)||(28846223-28846304)
chr8 (79-108)||(13152837-13152866)
[»] chr2 (2 HSPs)
chr2 (10-109)||(28841011-28841111)
chr2 (25-67)||(23866730-23866772)
[»] chr3 (3 HSPs)
chr3 (10-109)||(55194647-55194747)
chr3 (48-109)||(3857342-3857403)
chr3 (28-109)||(22527176-22527263)
[»] chr7 (5 HSPs)
chr7 (10-105)||(9230088-9230189)
chr7 (10-82)||(26786706-26786779)
chr7 (10-67)||(25024028-25024086)
chr7 (72-109)||(25024072-25024109)
chr7 (71-109)||(28041604-28041642)
[»] chr1 (5 HSPs)
chr1 (10-109)||(9636719-9636819)
chr1 (17-100)||(49465574-49465656)
chr1 (10-106)||(52754226-52754316)
chr1 (71-109)||(40865023-40865061)
chr1 (19-67)||(32380047-32380095)
[»] chr6 (3 HSPs)
chr6 (72-108)||(30621172-30621208)
chr6 (10-109)||(8035898-8036002)
chr6 (71-108)||(25599053-25599090)
[»] chr5 (3 HSPs)
chr5 (47-100)||(3055132-3055185)
chr5 (72-109)||(27169272-27169309)
chr5 (10-54)||(15731106-15731150)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 56039548 - 56039307
Alignment:
Q  10 ataattctcctaacaataaactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 109  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  56039548 ataattctcctaacaataaactattatatgattcacccaaaccaacactcattactcatagaaatactcaatacttacataaatcaaaatctatatatac 56039449  T
Q  110 aactcatttaatttacgacaaagctaaattaataccacattttttgtagtgagtcatagaaatgccaacgacttcatgaactaatgagaaccaatagatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56039448 aactcatttaatttacgacaaagctaaattaataccacattttttgtagcgagtcatagaaatgccaacgacttcatgaactaatgagaaccaatagatt 56039349  T
Q  210 cctatgctgcacaaacaaatgaattattcacttctagaacat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  56039348 cctatgctgcacaaacaaatgaattattcacttctagaacat 56039307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 31943850 - 31943929
Alignment:
Q  28 aactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 109  Q
    |||||||||| |||||||||||||||||  ||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  31943850 aactattataccattcacccaaaccaac--tcaatactcacaaaaatactcaatactcacataaatcaaaatctatatatac 31943929  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 9579535 - 9579615
Alignment:
Q  29 actattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 109  Q
    ||||||||| |||||||| | | ||| || || | ||||  ||||||||||||||||||||||||||||||||||||||||    
T  9579535 actattataccattcacctacatcaatacccaatgctcaccaaaatactcaatacttacataaatcaaaatctatatatac 9579615  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 9585230 - 9585310
Alignment:
Q  29 actattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 109  Q
    ||||||||| |||||||| | | ||| || || | ||||  ||||||||||||||||||||||||||||||||||||||||    
T  9585230 actattataccattcacctacatcaatacccaatgctcaccaaaatactcaatacttacataaatcaaaatctatatatac 9585310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 29528447 - 29528347
Alignment:
Q  10 ataattctc-ctaacaataaactattatatcattcacccaaaccaacactcattactcataaaaatactcaatactt-acataaatcaaaatctatatat 107  Q
    ||||||||| ||||| || |||||||||| |||||||||||| ||| ||| |||||||| | |||||||| |||||  | | ||||||||||||||||||    
T  29528447 ataattctctctaactatgaactattataccattcacccaaatcaatact-attactcacagaaatactctatactccatagaaatcaaaatctatatat 29528349  T
Q  108 ac 109  Q
    ||    
T  29528348 ac 29528347  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 4325218 - 4325267
Alignment:
Q  18 cctaacaataaactattatatcattcacccaaaccaacactcattactca 67  Q
    |||||| ||||||||||||| |||||| ||||||||| ||||| ||||||    
T  4325218 cctaactataaactattataccattcatccaaaccaatactcaatactca 4325267  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 23448841 - 23448941
Alignment:
Q  10 ataattctc-ctaacaataaactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatata 108  Q
    ||||||||| ||||| || |||||||||||||||||||||||| || |||||||||||  | ||||||||||| || ||| |||||||||||||||||||    
T  23448841 ataattctcactaactatgaactattatatcattcacccaaacaaatactcattactctcataaatactcaatgctcacagaaatcaaaatctatatata 23448940  T
Q  109 c 109  Q
    |    
T  23448941 c 23448941  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 30694188 - 30694271
Alignment:
Q  26 taaactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 109  Q
    ||||||||| || |||| ||||||| ||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30694188 taaactattgtaccattaacccaaatcaatactcaatactcacaaaaatactcaatactcacataaatcaaaatctatatatac 30694271  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 9256075 - 9256155
Alignment:
Q  28 aactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatata 108  Q
    |||||||||| |||||||||||||||| | ||| |||||| | |||||||||||||| |||| ||||||||||||||||||    
T  9256075 aactattataccattcacccaaaccaataatcaatactcacataaatactcaatactcacatcaatcaaaatctatatata 9256155  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 28846223 - 28846304
Alignment:
Q  28 aactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 109  Q
    |||||||||| |||||||| ||||||  ||||| |||||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  28846223 aactattataccattcacctaaaccattactcaatactcatagaaatagtcaatactcacagaaatcaaaatctatatatac 28846304  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 108
Target Start/End: Complemental strand, 13152866 - 13152837
Alignment:
Q  79 aatacttacataaatcaaaatctatatata 108  Q
    ||||||||||||||||||||||||||||||    
T  13152866 aatacttacataaatcaaaatctatatata 13152837  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 28841011 - 28841111
Alignment:
Q  10 ataattctcc-taacaataaactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatata 108  Q
    |||||||||| |||| || |||||||||| |||||||||||||||| | ||| ||| || | |||||||||||||| ||||||||||||||||||| |||    
T  28841011 ataattctccctaactatgaactattataccattcacccaaaccaatattcaatacccacataaatactcaatactcacataaatcaaaatctatacata 28841110  T
Q  109 c 109  Q
    |    
T  28841111 c 28841111  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 23866730 - 23866772
Alignment:
Q  25 ataaactattatatcattcacccaaaccaacactcattactca 67  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||    
T  23866730 ataaactattataccattcacccaaaccaatactcaatactca 23866772  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 55194647 - 55194747
Alignment:
Q  10 ataattctcc-taacaataaactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatata 108  Q
    |||||||||| |||| || |||||||||| ||||||||||||||||  || | ||||||   |||||||||||||  |||||||||||||||||||||||    
T  55194647 ataattctccctaactatgaactattataccattcacccaaaccaatgcttaatactcacggaaatactcaatacccacataaatcaaaatctatatata 55194746  T
Q  109 c 109  Q
    |    
T  55194747 c 55194747  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 3857403 - 3857342
Alignment:
Q  48 aaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 109  Q
    ||||||| ||||| || ||| |||||||||||||||| | | ||||||||||||||||||||    
T  3857403 aaaccaatactcaatattcacaaaaatactcaatactcatagaaatcaaaatctatatatac 3857342  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 22527176 - 22527263
Alignment:
Q  28 aactattatatcattcacccaaaccaacactcatta------ctcataaaaatactcaatacttacataaatcaaaatctatatatac 109  Q
    |||||||||||||||||| |||| ||| ||||| ||      |||| | |||||||||||||| ||| ||||||||||||||||||||    
T  22527176 aactattatatcattcactcaaaacaatactcaatagtaatactcacataaatactcaatactcacaaaaatcaaaatctatatatac 22527263  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 9230088 - 9230189
Alignment:
Q  10 ataattctcc-taacaataaactattatatcattcacccaaaccaacactcat-----tactcataaaaatactcaatacttacataaatcaaaatctat 103  Q
    |||||||||| |||| || |||||||||| ||||||| |||||||| |||||      |||||| |||||||||||||||| ||||||||||||||||||    
T  9230088 ataattctccctaactatgaactattataccattcactcaaaccaatactcaactcaatactcacaaaaatactcaatactcacataaatcaaaatctat 9230187  T
Q  104 at 105  Q
    ||    
T  9230188 at 9230189  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 26786779 - 26786706
Alignment:
Q  10 ataattctcc-taacaataaactattatatcattcacccaaaccaacactcattactcataaaaatactcaata 82  Q
    |||||||||| |||| || |||||||||| |||||||||||||||| | ||| |||||| ||||||||||||||    
T  26786779 ataattctccataactatgaactattataccattcacccaaaccaatattcaatactcacaaaaatactcaata 26786706  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 25024028 - 25024086
Alignment:
Q  10 ataattctcc-taacaataaactattatatcattcacccaaaccaacactcattactca 67  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||| ||||| ||||||    
T  25024028 ataattctccctaactataaactattataccattcacccaaaccaatactcaatactca 25024086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 25024072 - 25024109
Alignment:
Q  72 aatactcaatacttacataaatcaaaatctatatatac 109  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  25024072 aatactcaatactcacataaatcaaaatctatatatac 25024109  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 28041642 - 28041604
Alignment:
Q  71 aaatactcaatacttacataaatcaaaatctatatatac 109  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  28041642 aaatactcaatactcacataaatcaaaatgtatatatac 28041604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 9636719 - 9636819
Alignment:
Q  10 ataattctcct-aacaataaactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatata 108  Q
    ||||||||||| ||| || ||||||  || |||||||| ||||||| | ||| |||||| |||||||||||||| | ||| |||||||||||||||||||    
T  9636719 ataattctccttaaccatgaactatcgtaccattcacctaaaccaataatcaatactcacaaaaatactcaataatcacagaaatcaaaatctatatata 9636818  T
Q  109 c 109  Q
    |    
T  9636819 c 9636819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 49465656 - 49465574
Alignment:
Q  17 tcctaacaataaactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatc 100  Q
    ||||||| || |||||||||| | || | ||||||||| ||||| | |||||| |||||||||||||| ||| |||||||||||    
T  49465656 tcctaactatgaactattataccctttatccaaaccaatactcaatgctcatagaaatactcaatactcaca-aaatcaaaatc 49465574  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 52754316 - 52754226
Alignment:
Q  10 ataattctc-ctaacaataaactattatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatata 106  Q
    ||||||||| ||||| || ||||||||||  |||||||||||||||       |||||| |||||||||||||||| ||||||||||| || ||||||    
T  52754316 ataattctctctaactatgaactattatactattcacccaaaccaa-------tactcacaaaaatactcaatactcacataaatcaatatatatata 52754226  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 40865061 - 40865023
Alignment:
Q  71 aaatactcaatacttacataaatcaaaatctatatatac 109  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  40865061 aaatactcaatactcacataaatcaaaatttatatatac 40865023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 32380095 - 32380047
Alignment:
Q  19 ctaacaataaactattatatcattcacccaaaccaacactcattactca 67  Q
    ||||| || ||||||||||||||||||||||||||| ||| | ||||||    
T  32380095 ctaactatgaactattatatcattcacccaaaccaatacttaatactca 32380047  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 30621172 - 30621208
Alignment:
Q  72 aatactcaatacttacataaatcaaaatctatatata 108  Q
    |||||||||||||||||||||||||||||||||||||    
T  30621172 aatactcaatacttacataaatcaaaatctatatata 30621208  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 8036002 - 8035898
Alignment:
Q  10 ataattctcc-taacaataaactattatatca----ttcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctata 104  Q
    |||||||||| |||| || |||||||||||||    |||||| || |||| ||||| |||||||| |||||||||||||| | | || ||||||||||||    
T  8036002 ataattctccctaactatgaactattatatcattcattcaccaaatccaatactcaatactcatagaaatactcaatactcataaaattcaaaatctata 8035903  T
Q  105 tatac 109  Q
    |||||    
T  8035902 tatac 8035898  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 25599053 - 25599090
Alignment:
Q  71 aaatactcaatacttacataaatcaaaatctatatata 108  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  25599053 aaatactcaatacttacagaaatgaaaatctatatata 25599090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 3055132 - 3055185
Alignment:
Q  47 caaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatc 100  Q
    |||||||| ||||| ||| || |||||||||||||||| |||||||||||||||    
T  3055132 caaaccaatactcaatacgcacaaaaatactcaatactcacataaatcaaaatc 3055185  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 27169309 - 27169272
Alignment:
Q  72 aatactcaatacttacataaatcaaaatctatatatac 109  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  27169309 aatactcaatactcacataaatcaaaatcaatatatac 27169272  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 15731150 - 15731106
Alignment:
Q  10 ataattctcctaacaataaactattatatcattcacccaaaccaa 54  Q
    |||||||||||||| || ||||||||||  |||||||||||||||    
T  15731150 ataattctcctaactatgaactattatactattcacccaaaccaa 15731106  T

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