View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_high_31 (Length: 230)

Name: NF1063_high_31
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_high_31
NF1063_high_31
[»] chr1 (5 HSPs)
chr1 (98-144)||(50140224-50140270)
chr1 (1-74)||(50140329-50140402)
chr1 (157-193)||(49775691-49775727)
chr1 (157-193)||(1141472-1141508)
chr1 (157-193)||(9245900-9245936)
[»] chr5 (3 HSPs)
chr5 (153-193)||(36193740-36193780)
chr5 (152-193)||(8317433-8317474)
chr5 (157-193)||(33700086-33700122)
[»] chr4 (3 HSPs)
chr4 (151-193)||(12842277-12842319)
chr4 (152-193)||(4734226-4734267)
chr4 (157-193)||(2933560-2933596)
[»] chr7 (4 HSPs)
chr7 (157-193)||(6728874-6728910)
chr7 (157-193)||(46205942-46205978)
chr7 (151-189)||(29772343-29772381)
chr7 (160-192)||(37961527-37961559)
[»] chr2 (2 HSPs)
chr2 (155-193)||(33425211-33425249)
chr2 (157-193)||(24441955-24441991)
[»] chr8 (4 HSPs)
chr8 (157-193)||(11796575-11796611)
chr8 (150-193)||(39823347-39823390)
chr8 (152-193)||(10335473-10335514)
chr8 (157-193)||(28321134-28321170)
[»] chr3 (3 HSPs)
chr3 (157-193)||(26814045-26814081)
chr3 (152-193)||(38360283-38360324)
chr3 (157-193)||(54383775-54383811)
[»] scaffold0227 (1 HSPs)
scaffold0227 (157-193)||(5154-5190)


Alignment Details
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 50140270 - 50140224
Alignment:
Q  98 caagttcaataagtggtcattagagtttctatgagataaactcattt 144  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  50140270 caagttcaataagtggtcattagagtttctctgagataaactcattt 50140224  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 50140402 - 50140329
Alignment:
Q  1 gatcgattatgtaatttagtctttannnnnnnnnaccaaactacaatgcttaaataggtggtcatctttctatc 74  Q
    |||||||||||||||||||||||||         ||||||||||||| ||||||||||||||||||||||||||    
T  50140402 gatcgattatgtaatttagtctttatttttttttaccaaactacaatacttaaataggtggtcatctttctatc 50140329  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 49775691 - 49775727
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||| ||||||||||||||||||||||||||||    
T  49775691 aatgatatttgaacatcatttttgtacaaccaacaac 49775727  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 1141472 - 1141508
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  1141472 aatgatatatgaacatcattttagtataaccaacaac 1141508  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 9245936 - 9245900
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    ||||||||||  |||||||||||||||||||||||||    
T  9245936 aatgatatattgacatcatttttgtacaaccaacaac 9245900  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 36193740 - 36193780
Alignment:
Q  153 gagaaatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36193740 gagaaatgatatatgaacatcatttttgtacaaccaacaac 36193780  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 8317474 - 8317433
Alignment:
Q  152 agagaaatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  8317474 agaggaatgatatttgaacatcatttttgtacaaccaacaac 8317433  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 33700122 - 33700086
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||||||||||||||||| ||||||||||||||    
T  33700122 aatgatatatgaacatcattttggtacaaccaacaac 33700086  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 12842277 - 12842319
Alignment:
Q  151 aagagaaatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  12842277 aagaggaatgatatatgaacatcatttttgtacaaccaacaac 12842319  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 4734267 - 4734226
Alignment:
Q  152 agagaaatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||| ||||||||||  |||||||||||||||||||||||||    
T  4734267 agaggaatgatatattgacatcatttttgtacaaccaacaac 4734226  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 2933560 - 2933596
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    ||||||||||  |||||||||||||||||||||||||    
T  2933560 aatgatatattgacatcatttttgtacaaccaacaac 2933596  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 6728910 - 6728874
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||||||||||||||||||||||||||||||||    
T  6728910 aatgatatatgaacatcatttttgtacaaccaacaac 6728874  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 46205978 - 46205942
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    ||||||||| |||||||||||||||||||||||||||    
T  46205978 aatgatataagaacatcatttttgtacaaccaacaac 46205942  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 29772343 - 29772381
Alignment:
Q  151 aagagaaatgatatatgaacatcatttttgtacaaccaa 189  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  29772343 aagaggaatgatatatgaacatcatttttatacaaccaa 29772381  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 37961527 - 37961559
Alignment:
Q  160 gatatatgaacatcatttttgtacaaccaacaa 192  Q
    ||||||||||||| |||||||||||||||||||    
T  37961527 gatatatgaacataatttttgtacaaccaacaa 37961559  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 33425249 - 33425211
Alignment:
Q  155 gaaatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  33425249 gaaatgatatatgaacatcatttttgtataaccaacaac 33425211  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 24441955 - 24441991
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24441955 aatgatataagaacatcatttttgtacaaccaacaac 24441991  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 11796575 - 11796611
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||| ||||||||||||||||||||||||||||    
T  11796575 aatgatatttgaacatcatttttgtacaaccaacaac 11796611  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 39823347 - 39823390
Alignment:
Q  150 taagagaaatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||| ||||||||||||||||||||||  |||||||||||||    
T  39823347 taagagtaatgatatatgaacatcattttgatacaaccaacaac 39823390  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 10335514 - 10335473
Alignment:
Q  152 agagaaatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||| ||||||||||||||||||||||  |||||||||||||    
T  10335514 agagtaatgatatatgaacatcattttgatacaaccaacaac 10335473  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 28321170 - 28321134
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  28321170 aatgatacatgaacattatttttgtacaaccaacaac 28321134  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 26814081 - 26814045
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26814081 aatgatatttgaacatcatttttgtacaaccaacaac 26814045  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 38360324 - 38360283
Alignment:
Q  152 agagaaatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||| |||||||||||||||| ||||||||||||| ||||||    
T  38360324 agaggaatgatatatgaacataatttttgtacaacgaacaac 38360283  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 54383811 - 54383775
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  54383811 aatgatatatgaacatcattttggtacagccaacaac 54383775  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 5190 - 5154
Alignment:
Q  157 aatgatatatgaacatcatttttgtacaaccaacaac 193  Q
    |||||||||||||||| | ||||||||||||||||||    
T  5190 aatgatatatgaacataagttttgtacaaccaacaac 5154  T

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