View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_high_6 (Length: 612)
Name: NF1063_high_6
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 46 - 456
Target Start/End: Complemental strand, 42207823 - 42207392
Alignment:
| Q |
46 |
caaacagggtcttggcatagagtaagtttctcacgttttctttctttcaagcagaagattgaatgttcttgaataatcaagattcaagaatgaaaaggag |
145 |
Q |
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| T |
42207823 |
caaacagggtcttggcagagagtaagtttctcacgttttctttctttcaagcagaagattgaatgttcttgaataatcaagattcaagaatgaaaaagag |
42207724 |
T |
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| Q |
146 |
cattcattaacttaaatacggtggaatcaaaattccaaagttaccgtagcgagcaaaaaagtttatatttcaaa------gcataaaatacggt------ |
233 |
Q |
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| T |
42207723 |
cattcatcaacttaaatacggtggaatcaaaattccaaaattaccgtagcgaacaaaaaagtttatatttcaaaacattagcataaaatagagtcgtggg |
42207624 |
T |
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| Q |
234 |
---------ggttcttttctcaaatcagaagattgagttttgttgaaaaatcaagaatgagaatatgggcatatcccaacatgtatgaatgcaaatatgt |
324 |
Q |
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| T |
42207623 |
actgtgcacggttcttttctcaaatctgaagattgaattttgttgaaaaatcaagaatgagaatatgggcatatcccaacatgtatgaatgcaaatatgt |
42207524 |
T |
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| Q |
325 |
tggaataaaaattcaaaaattaccgtagcaaacgaaaaagatgactgagggacccaacatttgtaaaagtttcgatcaacattcgtatagttttgttctt |
424 |
Q |
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| T |
42207523 |
tggaattaaaattcaaaaattaccgtagcaaacgaaaaagatgactgagggacccaacattcgtaaaagtttcgatcaacattcgtatagttttgttctt |
42207424 |
T |
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| Q |
425 |
ttcttgaagaaaaaataatgaaacctcaataa |
456 |
Q |
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| T |
42207423 |
ttcttgtagaaaaaataatgaaacctcaataa |
42207392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 513 - 609
Target Start/End: Complemental strand, 42207393 - 42207297
Alignment:
| Q |
513 |
aacagaaggatctaaaatgcagtctcttttagaagttgaacagatgtcacacatgttagtttatccatcaccaaaccaagagatacattttctctgc |
609 |
Q |
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| T |
42207393 |
aacagaaggatctaaaatgcagtctcttttagaagttgaacagatgtcacacatgttagtttatccatcaccaaaccaagggatacatattctctgc |
42207297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 556 - 597
Target Start/End: Complemental strand, 42208886 - 42208845
Alignment:
| Q |
556 |
atgtcacacatgttagtttatccatcaccaaaccaagagata |
597 |
Q |
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| T |
42208886 |
atgtcacacatgctagtttatccatcaccaaaccaagggata |
42208845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 42207986 - 42207953
Alignment:
| Q |
94 |
aagcagaagattgaatgttcttgaataatcaaga |
127 |
Q |
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| T |
42207986 |
aagcagaagattgaatgttcttgaataaccaaga |
42207953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 553 - 591
Target Start/End: Complemental strand, 6918331 - 6918293
Alignment:
| Q |
553 |
cagatgtcacacatgttagtttatccatcaccaaaccaa |
591 |
Q |
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| T |
6918331 |
cagatgtcacacatgctagtttatccatcaccaaaccaa |
6918293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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