View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_low_1 (Length: 981)

Name: NF1063_low_1
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_low_1
NF1063_low_1
[»] chr8 (18 HSPs)
chr8 (99-955)||(35431021-35431866)
chr8 (158-270)||(39820436-39820547)
chr8 (215-274)||(1676715-1676774)
chr8 (218-283)||(13009493-13009558)
chr8 (643-722)||(36054784-36054864)
chr8 (220-270)||(13845241-13845291)
chr8 (675-722)||(36204136-36204183)
chr8 (670-703)||(1445349-1445382)
chr8 (221-274)||(3658150-3658203)
chr8 (643-703)||(16890390-16890451)
chr8 (668-703)||(8251230-8251265)
chr8 (669-703)||(30112544-30112578)
chr8 (668-722)||(31658847-31658901)
chr8 (158-224)||(36450694-36450759)
chr8 (160-230)||(44067574-44067644)
chr8 (155-200)||(13436907-13436952)
chr8 (218-283)||(40063945-40064010)
chr8 (218-279)||(44067514-44067575)
[»] chr7 (16 HSPs)
chr7 (156-274)||(23751903-23752020)
chr7 (218-283)||(29812664-29812729)
chr7 (171-271)||(12278841-12278941)
chr7 (221-279)||(4017797-4017855)
chr7 (221-283)||(22683758-22683820)
chr7 (659-722)||(7307425-7307488)
chr7 (668-703)||(17205123-17205158)
chr7 (644-701)||(6549222-6549280)
chr7 (664-722)||(37048565-37048623)
chr7 (218-274)||(23930222-23930278)
chr7 (659-703)||(46101331-46101375)
chr7 (218-272)||(17780084-17780138)
chr7 (156-230)||(21138929-21139002)
chr7 (221-279)||(38804558-38804616)
chr7 (157-269)||(21880160-21880272)
chr7 (218-279)||(43249991-43250052)
[»] chr5 (13 HSPs)
chr5 (160-274)||(7997108-7997222)
chr5 (218-283)||(39695999-39696064)
chr5 (218-270)||(43554528-43554580)
chr5 (228-279)||(42469219-42469270)
chr5 (659-722)||(27192996-27193059)
chr5 (162-259)||(36577616-36577717)
chr5 (659-723)||(35931530-35931594)
chr5 (659-722)||(19296257-19296320)
chr5 (231-285)||(2577193-2577247)
chr5 (220-282)||(18607099-18607161)
chr5 (220-270)||(25863211-25863261)
chr5 (153-277)||(19737416-19737541)
chr5 (220-269)||(31264446-31264495)
[»] chr4 (17 HSPs)
chr4 (156-283)||(3144585-3144717)
chr4 (158-272)||(39507059-39507173)
chr4 (218-279)||(20743278-20743339)
chr4 (644-704)||(34319521-34319582)
chr4 (659-703)||(54863909-54863953)
chr4 (158-229)||(17876214-17876285)
chr4 (218-279)||(23386143-23386205)
chr4 (664-722)||(33721715-33721773)
chr4 (218-279)||(24343505-24343566)
chr4 (218-270)||(31243548-31243600)
chr4 (223-279)||(46971904-46971960)
chr4 (228-268)||(49659533-49659573)
chr4 (218-268)||(6273953-6274003)
chr4 (673-703)||(16572251-16572281)
chr4 (225-274)||(34515881-34515930)
chr4 (668-701)||(44884473-44884506)
chr4 (226-283)||(47191001-47191058)
[»] chr6 (15 HSPs)
chr6 (218-279)||(6389741-6389802)
chr6 (161-274)||(12235462-12235575)
chr6 (218-274)||(26247429-26247485)
chr6 (158-274)||(34446568-34446690)
chr6 (218-271)||(17168463-17168516)
chr6 (224-268)||(2153893-2153937)
chr6 (668-703)||(606736-606771)
chr6 (159-269)||(33419181-33419292)
chr6 (217-274)||(12086344-12086401)
chr6 (215-284)||(13689190-13689259)
chr6 (218-271)||(19602181-19602234)
chr6 (222-272)||(6299517-6299567)
chr6 (222-272)||(6306327-6306377)
chr6 (229-274)||(7625125-7625170)
chr6 (247-284)||(14819654-14819691)
[»] chr3 (30 HSPs)
chr3 (215-279)||(15864831-15864895)
chr3 (160-279)||(24204983-24205102)
chr3 (220-279)||(25892458-25892517)
chr3 (159-272)||(25365467-25365580)
chr3 (644-696)||(8825483-8825535)
chr3 (641-703)||(35455274-35455337)
chr3 (170-270)||(26665143-26665243)
chr3 (664-704)||(55452419-55452459)
chr3 (668-703)||(45261358-45261393)
chr3 (223-269)||(1830351-1830397)
chr3 (221-271)||(34189433-34189483)
chr3 (155-270)||(3730105-3730217)
chr3 (218-271)||(14223853-14223906)
chr3 (219-279)||(8903430-8903489)
chr3 (218-274)||(12704657-12704713)
chr3 (641-703)||(17003694-17003758)
chr3 (671-702)||(36658973-36659004)
chr3 (668-703)||(43320250-43320285)
chr3 (668-703)||(46918581-46918616)
chr3 (149-227)||(7949015-7949092)
chr3 (158-200)||(17005548-17005590)
chr3 (221-271)||(25326432-25326482)
chr3 (220-274)||(25652033-25652087)
chr3 (668-722)||(32211889-32211943)
chr3 (218-272)||(52369780-52369834)
chr3 (224-277)||(20691319-20691372)
chr3 (218-271)||(25074795-25074848)
chr3 (159-200)||(25211607-25211648)
chr3 (218-271)||(27903638-27903691)
chr3 (672-721)||(40345031-40345080)
[»] scaffold0199 (1 HSPs)
scaffold0199 (215-274)||(1952-2011)
[»] chr2 (20 HSPs)
chr2 (218-271)||(23354652-23354705)
chr2 (218-283)||(25544475-25544540)
chr2 (221-282)||(38919201-38919262)
chr2 (215-272)||(12748689-12748746)
chr2 (218-271)||(23354995-23355048)
chr2 (218-271)||(24011042-24011095)
chr2 (158-224)||(30563474-30563540)
chr2 (221-271)||(37986785-37986835)
chr2 (659-703)||(3711956-3712000)
chr2 (659-703)||(39063713-39063757)
chr2 (181-271)||(18570978-18571068)
chr2 (216-270)||(22085011-22085066)
chr2 (671-722)||(38496470-38496521)
chr2 (672-703)||(40442716-40442747)
chr2 (668-703)||(40503869-40503904)
chr2 (221-271)||(10535762-10535812)
chr2 (218-280)||(11308004-11308065)
chr2 (158-271)||(34006930-34007044)
chr2 (644-703)||(38214081-38214142)
chr2 (218-271)||(19573984-19574037)
[»] chr1 (19 HSPs)
chr1 (664-722)||(3574716-3574774)
chr1 (641-722)||(42745510-42745592)
chr1 (219-283)||(6573983-6574047)
chr1 (156-271)||(19637774-19637889)
chr1 (666-722)||(31181152-31181208)
chr1 (218-274)||(42004947-42005003)
chr1 (671-723)||(9851911-9851963)
chr1 (644-722)||(27442471-27442550)
chr1 (668-703)||(36437318-36437353)
chr1 (221-279)||(48415728-48415787)
chr1 (220-274)||(6936402-6936456)
chr1 (668-722)||(17971462-17971516)
chr1 (670-703)||(31003699-31003732)
chr1 (158-284)||(40747707-40747839)
chr1 (671-722)||(17988383-17988434)
chr1 (236-283)||(23440004-23440051)
chr1 (224-269)||(12040688-12040734)
chr1 (155-271)||(7988388-7988504)
chr1 (218-274)||(21145469-21145526)
[»] scaffold0836 (1 HSPs)
scaffold0836 (668-722)||(3016-3070)
[»] scaffold0015 (1 HSPs)
scaffold0015 (644-722)||(38932-39010)
[»] scaffold0778 (1 HSPs)
scaffold0778 (222-279)||(4404-4461)
[»] scaffold0598 (1 HSPs)
scaffold0598 (218-274)||(8053-8109)


Alignment Details
Target: chr8 (Bit Score: 688; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 99 - 955
Target Start/End: Original strand, 35431021 - 35431866
Alignment:
Q  99 tatgttatgtataattttctaactatcataattgtgaccttcacgctacaggttagaatctatgaagcacaaacacttcttggattaggggtgtcctggt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  35431021 tatgttatgtataattttctaactatcataattgtgaccttcacgatacaggttagaatctatgaagcacagacactttttggattaggggtgtcctggt 35431120  T
Q  199 gttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtctttatctgtattgta 298  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| | ||||| |||||    
T  35431121 gttggatatgcatcgatgtccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatccgtttcggtatctctgtctgtgttgta 35431220  T
Q  299 tatgatgtttgtgtttaggtctgtgcttcataggttagaattcaagattaaaaattatactctgggatcattattgtgttattaaaatgtgtagatgaat 398  Q
    | ||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35431221 tctgatgt------------ctgtgcttcataggttagaattcaagattaaaaattatactctgggatcattattgtgttgttaaaatgtgtagatgaat 35431308  T
Q  399 tggtccacctagtactgcttatgtcacaattggtaccaaggtaaaagaagctgtggataaggtaaggtctttttggtatacatctatatttgcacagatc 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35431309 tggtccacctagtactgcttatgtcacaattggtaccaaggtaaaagaagctgtggataaggtaaggtctttttggtatacatctatatttgcactgatc 35431408  T
Q  499 nnnnnnngaattaattgtatgcaacatatgtttaacagactattcttcctctcttggcagagcttctgcaannnnnnnngtctcttggaataattggcac 598  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| |||||||||||||    
T  35431409 tttttttgaattaattgtatgcaacatatgtttaacagactattcttcctctcttggcagagcttctgcaattttttttgtctcttagaataattggcac 35431508  T
Q  599 actttaaaatacaaatacaatatttgttattattgtttt-cactaatataagaaaaatctcaaaataaaattggtcctatttataagaaaatgtcacaac 697  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  35431509 actttaaaatacaaatacaatatttgttattattgtttttcactaatataagaaaattttcaaaataaaattggtcctatttataagaaaatgtcacaac 35431608  T
Q  698 ttttaaattatagtcattgtttaaatacaattgataaggataatataaaattggtaatttcttgaaaattagttcacaatctaaatgtgagtattaaatt 797  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35431609 ttttaaattatagtcattgtttaaatacaattgataaggataatataaaattggtaatttcttgaaaaatagttcacaatctaaatgtgagtattaaatt 35431708  T
Q  798 gagaggggggagtacaaccaaactcttgcagtgaaagtgaactaacacctcatatagcaactttccccatcccccactcagcgatagatgtagcttactc 897  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35431709 gagaggggggagtacaaccaaactcttgcagtgaaagtgaactaacacctcatatagcaacttcccccatcccccactcagcgatagatgtagcttactc 35431808  T
Q  898 tatttattgatcggaaacgaacttcttcaagtacacaaaactttcactgactctgtgg 955  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35431809 tatttattgatcggaaacgaacttcttcaagtacacaaaactttcactcactctgtgg 35431866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 39820547 - 39820436
Alignment:
Q  158 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 257  Q
    |||||||||||  |||||||| |||||||| |||||| | ||| ||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatttt 39820449  T
Q  258 cttaaattattat 270  Q
    || ||||||||||    
T  39820448 ctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 1676774 - 1676715
Alignment:
Q  215 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  1676774 tgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgt 1676715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 13009493 - 13009558
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 283  Q
    |||||||||||| ||||||||||||||| |||||  |||||| |||||||||||||| ||||||||    
T  13009493 ccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcggtgtc 13009558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 643 - 722
Target Start/End: Original strand, 36054784 - 36054864
Alignment:
Q  643 atataagaaaaatctcaaaataaaatt-ggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    ||||||||||| | |||||||||  || ||||||||||||||||||||||||||||||||||  |||| | ||||||||||    
T  36054784 atataagaaaattttcaaaataatttttggtcctatttataagaaaatgtcacaacttttaaggtatatttattgtttaaa 36054864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 13845291 - 13845241
Alignment:
Q  220 gacacgacacctatgattacactaaaatatatcattttcttaaattattat 270  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 675 - 722
Target Start/End: Complemental strand, 36204183 - 36204136
Alignment:
Q  675 tatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    ||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  36204183 tatttataaaaaaatgtcacaatttttaaaatatagtcattgtttaaa 36204136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 703
Target Start/End: Original strand, 1445349 - 1445382
Alignment:
Q  670 ggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||||||||||||||||||||||||    
T  1445349 ggtcctatttataagaaaatgtcacaacttttaa 1445382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 3658203 - 3658150
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    |||||||||||||||||||||| || || || ||||||| ||||||||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgt 3658150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 703
Target Start/End: Complemental strand, 16890451 - 16890390
Alignment:
Q  643 atataagaaaaatctcaaaa-taaaattggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||| |||||| | | |||||||||||||||| |||||| |||||||||||||    
T  16890451 atataagaaaaatttcaaaaatgatattggtcctatttatatgaaaatatcacaacttttaa 16890390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 703
Target Start/End: Original strand, 8251230 - 8251265
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaa 703  Q
    |||||||||||||||||||||| |||||||||||||    
T  8251230 ttggtcctatttataagaaaatatcacaacttttaa 8251265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 669 - 703
Target Start/End: Complemental strand, 30112578 - 30112544
Alignment:
Q  669 tggtcctatttataagaaaatgtcacaacttttaa 703  Q
    |||||||||||||||||||||||||||| ||||||    
T  30112578 tggtcctatttataagaaaatgtcacaaattttaa 30112544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 668 - 722
Target Start/End: Original strand, 31658847 - 31658901
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    ||||| |||||||||||||||| |||||||||||||  | |||| ||||||||||    
T  31658847 ttggttctatttataagaaaatatcacaacttttaagatgtagttattgtttaaa 31658901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 36450694 - 36450759
Alignment:
Q  158 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac 224  Q
    |||||||||||| ||||| || |||||||| |||||||||||| ||| |||| ||| ||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcg-tgtccgacac 36450759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 44067644 - 44067574
Alignment:
Q  160 atgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacc 230  Q
    |||||||||  ||||| || | |||||| |||||||||||| ||| |||||||  ||||||||||||||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacacc 44067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 13436907 - 13436952
Alignment:
Q  155 aatctatgaagcacaaacacttcttggattaggggtgtcctggtgt 200  Q
    ||||||||||||||| ||||| ||||||||||| |||||| |||||    
T  13436907 aatctatgaagcacagacactccttggattaggcgtgtcccggtgt 13436952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 40064010 - 40063945
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 283  Q
    |||||||||| |||||||||||| | || ||| ||||||||| ||||||||||  || ||||||||    
T  40064010 ccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcggtgtc 40063945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 44067575 - 44067514
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    |||||||||||| ||| ||||||||  | ||| ||||||||| |||||||||||||| ||||    
T  44067575 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcgg 44067514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 23752020 - 23751903
Alignment:
Q  156 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatt 255  Q
    |||||||||||||| |||||| | |||||||| |||||| | |||  || |||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  23752020 atctatgaagcacagacacttatcggattaggcgtgtcccg-tgtctgacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatt 23751922  T
Q  256 ttcttaaattattatccgt 274  Q
    || | ||||||||||||||    
T  23751921 ttatcaaattattatccgt 23751903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 29812664 - 29812729
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 283  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||  ||||||||    
T  29812664 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcggtgtc 29812729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 271
Target Start/End: Complemental strand, 12278941 - 12278841
Alignment:
Q  171 acacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 270  Q
    ||||| || |||||||| |||||| |||||  || |||| | | ||||||||||||||| ||| |||||||| || ||| ||||||||||||||||||||    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattattat 12278842  T
Q  271 c 271  Q
    |    
T  12278841 c 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 4017797 - 4017855
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    ||||||||| ||||||||||||||| |||||| |||||| |||||||||||||| ||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcgg 4017855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 22683758 - 22683820
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 283  Q
    ||||||||||||||||| |||| || |||||||| |||| |||||||||||||| ||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcggtgtc 22683820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 659 - 722
Target Start/End: Original strand, 7307425 - 7307488
Alignment:
Q  659 aaaataaaattggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||||   |||| ||||||||||    
T  7307425 aaaaaaaaatcggtcatatttataagaaaatgtcacaacttttaaagagtagttattgtttaaa 7307488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 668 - 703
Target Start/End: Original strand, 17205123 - 17205158
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||||||||||||||||||||||||||    
T  17205123 ttggtcctatttataagaaaatgtcacaacttttaa 17205158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 644 - 701
Target Start/End: Complemental strand, 6549280 - 6549222
Alignment:
Q  644 tataagaaaaatctcaaaataaaatt-ggtcctatttataagaaaatgtcacaactttt 701  Q
    |||||||||| | |||||| |||||| |||||||||||||||||||| |||||||||||    
T  6549280 tataagaaaattttcaaaaaaaaatttggtcctatttataagaaaatatcacaactttt 6549222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 664 - 722
Target Start/End: Original strand, 37048565 - 37048623
Alignment:
Q  664 aaaattggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    ||||||| || ||||||||||||||| |||||||||||||| | |||| ||||||||||    
T  37048565 aaaattgatcttatttataagaaaatatcacaacttttaaagtgtagtgattgtttaaa 37048623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 23930278 - 23930222
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||||| ||||||||||||||||| || ||| ||||||||| |||||| |||||||    
T  23930278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgt 23930222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 659 - 703
Target Start/End: Complemental strand, 46101375 - 46101331
Alignment:
Q  659 aaaataaaattggtcctatttataagaaaatgtcacaacttttaa 703  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||    
T  46101375 aaaaaaaaattggtcttatttataagaaaatgtcataacttttaa 46101331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 17780084 - 17780138
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatcc 272  Q
    |||||||||||||||| ||||||   || ||| ||||||||||||||||||||||    
T  17780084 ccgacacgacacctattattacatagaattatgtcattttcttaaattattatcc 17780138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 21138929 - 21139002
Alignment:
Q  156 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacc 230  Q
    ||||||||||||| |||||| | | ||||| | |||||||||||| ||| ||| ||| |||||||||||||||||    
T  21138929 atctatgaagcacgaacactcccttgattaagcgtgtcctggtgtcggacacgtatc-atgtccgacacgacacc 21139002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 38804558 - 38804616
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    ||||||||||||||||||| ||  | ||| ||||||||| |||||||||||||| ||||    
T  38804558 acacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcgg 38804616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 21880272 - 21880160
Alignment:
Q  157 tctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgaca-cgacacctatgattacactaaaatatatcatt 255  Q
    ||||||||||||  |||||||| |||||||| |||||||||||| ||| | |  ||| ||||||||| |||||| | | |||||||| || ||| | |||    
T  21880272 tctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtaatt 21880174  T
Q  256 ttcttaaattatta 269  Q
    |||| |||||||||    
T  21880173 ttctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 43250052 - 43249991
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    |||||||||||| ||| ||||||||  | ||| ||||||||| |||||||||||||| ||||    
T  43250052 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcgg 43249991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 7997108 - 7997222
Alignment:
Q  160 atgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttct 259  Q
    ||||||||||||||||||| | |||||| |||||||| ||| ||| |||| ||  ||||||||||||||| ||| ||||||||  | |||||||||||||    
T  7997108 atgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatatcattttct 7997207  T
Q  260 taaattattatccgt 274  Q
     ||||||||||||||    
T  7997208 caaattattatccgt 7997222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 39695999 - 39696064
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 283  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||| || || ||||||||    
T  39695999 ccgacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtcggtgtc 39696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 43554580 - 43554528
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 270  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  43554580 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 42469270 - 42469219
Alignment:
Q  228 acctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcgg 42469219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 659 - 722
Target Start/End: Original strand, 27192996 - 27193059
Alignment:
Q  659 aaaataaaattggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||| ||| ||| ||||||||||||| ||||||||||||||||||  |||||| ||||||||||    
T  27192996 aaaaaaaagttgatcctatttataaggaaatgtcacaacttttaagatatagttattgtttaaa 27193059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 36577616 - 36577717
Alignment:
Q  162 gaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtc-----cgacacgacacctatgattacactaaaatatatcattt 256  Q
    |||||||| ||||||||||||||||| || ||| | ||| |||||||||||| ||||     ||||||||||| ||| |||| |||||| ||||||||||    
T  36577616 gaagcacagacacttcttggattaggcgtatcccg-tgtcggatacgcatcggtgtcgacaccgacacgacacatataattatactaaattatatcattt 36577714  T
Q  257 tct 259  Q
    |||    
T  36577715 tct 36577717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 659 - 723
Target Start/End: Original strand, 35931530 - 35931594
Alignment:
Q  659 aaaataaaattggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaat 723  Q
    |||| |||||||||||||||||||||||||| ||| ||||| |||| | |||| ||| |||||||    
T  35931530 aaaaaaaaattggtcctatttataagaaaatttcataacttctaaagtgtagttattttttaaat 35931594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 722
Target Start/End: Complemental strand, 19296320 - 19296257
Alignment:
Q  659 aaaataaaattggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||||||||||||||||   ||||| |||||||||||||||||||| | |||| |||| |||||    
T  19296320 aaaataaaattggtcctcaatataaaaaaatgtcacaacttttaaagtgtagttattgcttaaa 19296257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 2577193 - 2577247
Alignment:
Q  231 tatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtctt 285  Q
    ||||||||||||||| ||| ||||||||| ||||||||||| || ||||| ||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcggtttctt 2577247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 18607099 - 18607161
Alignment:
Q  220 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgt 282  Q
    ||||||||||||||||||||| | || ||| | ||||||| |||||||||||| | |||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcggtgt 18607161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 25863261 - 25863211
Alignment:
Q  220 gacacgacacctatgattacactaaaatatatcattttcttaaattattat 270  Q
    |||||||||| ||| |||||||| || ||||||||||||| ||||||||||    
T  25863261 gacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 19737416 - 19737541
Alignment:
Q  153 agaatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgaca-cgacacctatgattacactaaaatatat 251  Q
    |||| |||||||||||||||||| ||  ||||||  ||||| |||||| |||||| ||| | ||||  ||| |||||| ||||||| || | || ||| |    
T  19737416 agaagctatgaagcacaaacactcctcagattagatgtgtcttggtgtcggatacacattggtgtcaaacaccgacacatatgattgcattgaattatgt 19737515  T
Q  252 cattttcttaaattattatccgtttc 277  Q
     ||||||| ||||||||||| |||||    
T  19737516 aattttctcaaattattatcggtttc 19737541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  220 gacacgacacctatgattacactaaaatatatcattttcttaaattatta 269  Q
    |||||||||| |||||||||||| || ||| ||||||||| |||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 3144585 - 3144717
Alignment:
Q  156 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtc------cgacacgacacctatgattacactaaaatat 249  Q
    |||||||||||||  |||||||| |||||||| ||||| | |||||||| |||| | | ||||      ||||||||||||||||||||||||||| |||    
T  3144585 atctatgaagcacggacacttctcggattaggtgtgtc-tcgtgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattat 3144683  T
Q  250 atcattttcttaaattattatccgtttcggtgtc 283  Q
    |||||||||| |||||||||||||| | ||||||    
T  3144684 atcattttctgaaattattatccgtgtaggtgtc 3144717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 272
Target Start/End: Original strand, 39507059 - 39507173
Alignment:
Q  158 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 257  Q
    ||||||||||  |||||| || ||| |||| |||||  ||||| ||| ||| |||  |||||||||  ||||||||||||||||| || |||||||||||    
T  39507059 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacataacacctatgattacacttaattatatcatttt 39507158  T
Q  258 cttaaattattatcc 272  Q
    | |||||||||||||    
T  39507159 cataaattattatcc 39507173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 20743278 - 20743339
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    ||||||| ||||||||||||||||| || ||| ||||||||| |||||||||||||| ||||    
T  20743278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcgg 20743339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 644 - 704
Target Start/End: Original strand, 34319521 - 34319582
Alignment:
Q  644 tataagaaaaatctcaaaataaaa-ttggtcctatttataagaaaatgtcacaacttttaaa 704  Q
    |||||||||| | |||||| |||| ||||||||||||||||||||||||||||| |||||||    
T  34319521 tataagaaaattttcaaaaaaaaacttggtcctatttataagaaaatgtcacaatttttaaa 34319582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 659 - 703
Target Start/End: Original strand, 54863909 - 54863953
Alignment:
Q  659 aaaataaaattggtcctatttataagaaaatgtcacaacttttaa 703  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||    
T  54863909 aaaaaaaaattggtcctatttataagaaaaagtcacaacttttaa 54863953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 17876285 - 17876214
Alignment:
Q  158 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacac 229  Q
    |||||||||||| ||||| ||||||||||| |||||||||||| ||| | || ||| |||| ||||||||||    
T  17876285 ctatgaagcacagacactccttggattaggtgtgtcctggtgtcggacaagcgtcggtgtctgacacgacac 17876214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 23386205 - 23386143
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatca-ttttcttaaattattatccgtttcgg 279  Q
    |||||| ||||||||||||||||||||| ||||||| |||| ||||||||| |||||| ||||    
T  23386205 ccgacatgacacctatgattacactaaattatatcattttttttaaattatcatccgtatcgg 23386143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 664 - 722
Target Start/End: Complemental strand, 33721773 - 33721715
Alignment:
Q  664 aaaattggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||| |||||||||||||||||||||||||||| ||||||  | |||| ||||||||||    
T  33721773 aaaaatggtcctatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaa 33721715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 24343566 - 24343505
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    |||||||||||||||| |||||||| || ||| | ||||||| |||||||||||||| ||||    
T  24343566 ccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcgg 24343505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 31243548 - 31243600
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 270  Q
    |||||| |||||||||||||||||| || ||| ||||||||| ||||||||||    
T  31243548 ccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 46971904 - 46971960
Alignment:
Q  223 acgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    |||||||||||||| ||| |||||||| ||||| ||| |||||||||||||| ||||    
T  46971904 acgacacctatgataacagtaaaatatgtcattatctcaaattattatccgtgtcgg 46971960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  228 acctatgattacactaaaatatatcattttcttaaattatt 268  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 6274003 - 6273953
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattatt 268  Q
    ||||||||||  |||| ||||||||||| ||||||||||||| ||||||||    
T  6274003 ccgacacgacgactataattacactaaattatatcattttctcaaattatt 6273953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 673 - 703
Target Start/End: Original strand, 16572251 - 16572281
Alignment:
Q  673 cctatttataagaaaatgtcacaacttttaa 703  Q
    |||||||||||||||||||||||||||||||    
T  16572251 cctatttataagaaaatgtcacaacttttaa 16572281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 34515881 - 34515930
Alignment:
Q  225 gacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    |||||||||| ||||||| || ||| |||||||||| |||||||||||||    
T  34515881 gacacctatgtttacactgaattatgtcattttcttgaattattatccgt 34515930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 701
Target Start/End: Complemental strand, 44884506 - 44884473
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaactttt 701  Q
    |||||||||| |||||||||||||||||||||||    
T  44884506 ttggtcctatatataagaaaatgtcacaactttt 44884473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 47191001 - 47191058
Alignment:
Q  226 acacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 283  Q
    ||||||| |||||||||||| ||| ||||||||  |||||||||||| | ||||||||    
T  47191001 acacctaggattacactaaattatgtcattttcgcaaattattatccatgtcggtgtc 47191058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 6389802 - 6389741
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcgg 6389741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 12235462 - 12235575
Alignment:
Q  161 tgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttctt 260  Q
    ||||||||  |||||| ||||||||||||||||| ||||  ||| || | ||| |||| ||||||||||||||||||||||| || ||| |||||||||     
T  12235462 tgaagcacggacactttttggattaggggtgtcccggtgccggacacacgtcggtgtcggacacgacacctatgattacactgaattatgtcattttctc 12235561  T
Q  261 aaattattatccgt 274  Q
     |||||||||||||    
T  12235562 taattattatccgt 12235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 26247485 - 26247429
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  26247485 ccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgt 26247429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 34446690 - 34446568
Alignment:
Q  158 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgt------ccgacacgacacctatgattacactaaaatatat 251  Q
    |||||||||||  ||||| ||||||||||| ||||||  ||||  ||||||| ||| |||      ||||||||||||||||||||||||| || ||| |    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgt 34446591  T
Q  252 cattttcttaaattattatccgt 274  Q
    |||||||| ||||||||||||||    
T  34446590 cattttctcaaattattatccgt 34446568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 17168463 - 17168516
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  17168463 ccgacacgacacctattattacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 2153893 - 2153937
Alignment:
Q  224 cgacacctatgattacactaaaatatatcattttcttaaattatt 268  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  2153893 cgacacctataattacactaaattatatcattttcttaaattatt 2153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 668 - 703
Target Start/End: Complemental strand, 606771 - 606736
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||||||||||||||||||||||||||    
T  606771 ttggtcctatttataagaaaatgtcacaacttttaa 606736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 33419292 - 33419181
Alignment:
Q  159 tatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgaca-cgacacctatgattacactaaaatatatcatttt 257  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||| |||| | | |||| |||| | |||| ||| |||||| | || ||||||| |||    
T  33419292 tatgaagcacaaatacttcttggattaggcatgtcctggtgttggacacgcgttggtgtctgacaccaacacatataattacattgaattatatcaattt 33419193  T
Q  258 cttaaattatta 269  Q
     | |||||||||    
T  33419192 ttcaaattatta 33419181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 12086344 - 12086401
Alignment:
Q  217 tccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    |||||||||||||||||||||| ||| || ||| ||||| ||| ||||||||||||||    
T  12086344 tccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgt 12086401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 13689190 - 13689259
Alignment:
Q  215 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtct 284  Q
    |||||||||||| ||||||||||||| | |||| | | ||||||| ||||||||||| || |||||||||    
T  13689190 tgtccgacacgatacctatgattacattgaaatttgttattttctcaaattattatctgtgtcggtgtct 13689259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 19602181 - 19602234
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    ||||||| | ||||||||||||||| || ||||||||||||| |||||||||||    
T  19602181 ccgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 6299567 - 6299517
Alignment:
Q  222 cacgacacctatgattacactaaaatatatcattttcttaaattattatcc 272  Q
    |||||||||||| |||||| | || ||||||||||||| ||||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatcc 6299517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 6306377 - 6306327
Alignment:
Q  222 cacgacacctatgattacactaaaatatatcattttcttaaattattatcc 272  Q
    |||||||||||| |||||| | || ||||||||||||| ||||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatcc 6306327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 7625170 - 7625125
Alignment:
Q  229 cctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||| |||| |||||| ||||||||||||| ||||||||||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgt 7625125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 14819691 - 14819654
Alignment:
Q  247 tatatcattttcttaaattattatccgtttcggtgtct 284  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  14819691 tatatcagtttcttaaattattatccgtgtcggtgtct 14819654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 15864895 - 15864831
Alignment:
Q  215 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||    
T  15864895 tgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcgg 15864831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 24204983 - 24205102
Alignment:
Q  160 atgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttct 259  Q
    |||||||||  ||||| || | |||||| |||||||||||| ||| |||| ||  ||||||||||||||| ||| ||||||||  | ||| |||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttct 24205082  T
Q  260 taaattattatccgtttcgg 279  Q
     |||||||||||||| ||||    
T  24205083 caaattattatccgtgtcgg 24205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 25892517 - 25892458
Alignment:
Q  220 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||    
T  25892517 gacacgacacctatgattacactgaattatatcattttcttaaattattatttgtttcgg 25892458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 25365580 - 25365467
Alignment:
Q  159 tatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttc 258  Q
    ||||||||||| ||| | ||  ||||||| |||||||||||| | | || ||||| ||||||||||||||| |||||||||||  || ||| |||| |||    
T  25365580 tatgaagcacatacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgtccgacacgacacttatgattacaccgaattatgtcatattc 25365481  T
Q  259 ttaaattattatcc 272  Q
    | ||||||||||||    
T  25365480 tcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 644 - 696
Target Start/End: Complemental strand, 8825535 - 8825483
Alignment:
Q  644 tataagaaaaatctcaaaataaaattggtcctatttataagaaaatgtcacaa 696  Q
    |||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  8825535 tataagaaaattttcaaaaaaaaattggtcctatttataagaaaatgtcacaa 8825483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 641 - 703
Target Start/End: Original strand, 35455274 - 35455337
Alignment:
Q  641 taatataagaaaaatctcaaaataaaa-ttggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||| | |||||| |||| |||||| |||||||||||||||||||||||||||||    
T  35455274 taatataagaaaattttcaaaaaaaaaattggtcttatttataagaaaatgtcacaacttttaa 35455337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 26665243 - 26665143
Alignment:
Q  170 aacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttcttaaattatta 269  Q
    |||||| |||| ||||||||||| ||||||| ||| |||| ||| ||||||||||||| ||||| |||||| | ||  |  ||||||||| |||||||||    
T  26665243 aacactccttgaattaggggtgttctggtgtcggacacgcttcggtgtccgacacgacgcctataattacagtgaatcacgtcattttctcaaattatta 26665144  T
Q  270 t 270  Q
    |    
T  26665143 t 26665143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 704
Target Start/End: Original strand, 55452419 - 55452459
Alignment:
Q  664 aaaattggtcctatttataagaaaatgtcacaacttttaaa 704  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  55452419 aaaattggtcttatttataagaaaatgtcacaacttttaaa 55452459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 668 - 703
Target Start/End: Original strand, 45261358 - 45261393
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||||||||||||||||||||||||||    
T  45261358 ttggtcctatttataagaaaatgtcacaacttttaa 45261393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  223 acgacacctatgattacactaaaatatatcattttcttaaattatta 269  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 34189483 - 34189433
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    |||||||||||| ||||||||| |||||| ||||||||| |||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatc 34189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 3730105 - 3730217
Alignment:
Q  155 aatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcat 254  Q
    |||||||||||||   ||||| || |||||||| |||||| ||||   || | |||| | |||| ||||||||||||||||||||||| || ||| ||||    
T  3730105 aatctatgaagcatggacactcctcggattaggtgtgtcccggtg---gacatgcattggtgtcagacacgacacctatgattacactgaattatgtcat 3730201  T
Q  255 tttcttaaattattat 270  Q
    | ||| ||||||||||    
T  3730202 tatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 14223853 - 14223906
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    |||||||||||| ||||| ||||||||| |||||| |||||| |||||||||||    
T  14223853 ccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatc 14223906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 8903489 - 8903430
Alignment:
Q  219 cgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    ||||||||||||||| |||||||| |||||| ||||||||| ||| |||||||||| ||||    
T  8903489 cgacacgacacctataattacact-aaatatgtcattttctcaaaatattatccgtgtcgg 8903430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 12704657 - 12704713
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||||||||||||||||||||| | || ||| ||||||| | ||||||||||||||    
T  12704657 ccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgt 12704713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 641 - 703
Target Start/End: Complemental strand, 17003758 - 17003694
Alignment:
Q  641 taatataagaaaaatctcaaaataaaat-tggtcctatttataagaaaa-tgtcacaacttttaa 703  Q
    ||||||||||||| | |||||| ||||| ||||||||||||||| |||| |||||||||||||||    
T  17003758 taatataagaaaattttcaaaaaaaaatctggtcctatttataaaaaaaatgtcacaacttttaa 17003694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 671 - 702
Target Start/End: Original strand, 36658973 - 36659004
Alignment:
Q  671 gtcctatttataagaaaatgtcacaactttta 702  Q
    ||||||||||||||||||||||||||||||||    
T  36658973 gtcctatttataagaaaatgtcacaactttta 36659004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 703
Target Start/End: Complemental strand, 43320285 - 43320250
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaa 703  Q
    |||| |||||||||||||||||||||||||||||||    
T  43320285 ttggacctatttataagaaaatgtcacaacttttaa 43320250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 703
Target Start/End: Complemental strand, 46918616 - 46918581
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||||||||||||||||||| ||||||    
T  46918616 ttggtcctatttataagaaaatgtcacaatttttaa 46918581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 7949092 - 7949015
Alignment:
Q  149 ggttagaatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgac 227  Q
    ||||| ||||| ||||||||||| |||  | | |||||| |||||||||||||||||||  ||| ||||||||||||||    
T  7949092 ggttataatctctgaagcacaaatactcatcgtattaggtgtgtcctggtgttggatacaaatc-atgtccgacacgac 7949015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 17005548 - 17005590
Alignment:
Q  158 ctatgaagcacaaacacttcttggattaggggtgtcctggtgt 200  Q
    |||||||||||||||||| || ||||||| |||||||||||||    
T  17005548 ctatgaagcacaaacactcctcggattagaggtgtcctggtgt 17005590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 25326482 - 25326432
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    |||||||| |||| ||||||||||| ||||| ||||| |||||||||||||    
T  25326482 acacgacatctataattacactaaattatattatttttttaaattattatc 25326432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 25652033 - 25652087
Alignment:
Q  220 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||| |||||||| | |||||| || ||||||||||||| ||||||||||||||    
T  25652033 gacacaacacctataactacactgaattatatcattttctcaaattattatccgt 25652087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 668 - 722
Target Start/End: Complemental strand, 32211943 - 32211889
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||||| ||||||||||||||| |||||||||||||  | |||| ||||||||||    
T  32211943 ttggtcttatttataagaaaatttcacaacttttaaggtgtagttattgtttaaa 32211889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 52369834 - 52369780
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatcc 272  Q
    ||||||||||||||||||||||| | || ||| | ||||||| ||||||||||||    
T  52369834 ccgacacgacacctatgattacattgaattatgtaattttctcaaattattatcc 52369780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 20691372 - 20691319
Alignment:
Q  224 cgacacctatgattacactaaaatatatcattttcttaaattattatccgtttc 277  Q
    |||||| |||||||||||| || ||| ||||||||| ||||||||||| |||||    
T  20691372 cgacacatatgattacactgaattatgtcattttctcaaattattatcagtttc 20691319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 25074848 - 25074795
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    ||||||| || |||||||||||||| || ||| ||||||||| |||||||||||    
T  25074848 ccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 25211648 - 25211607
Alignment:
Q  159 tatgaagcacaaacacttcttggattaggggtgtcctggtgt 200  Q
    ||||||||||||||||||||  ||||||| ||||||||||||    
T  25211648 tatgaagcacaaacacttctcagattaggcgtgtcctggtgt 25211607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 27903691 - 27903638
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    ||||||| |||| |||||||||| |||| |||||| |||||| |||||||||||    
T  27903691 ccgacacaacacttatgattacattaaattatatcgttttctcaaattattatc 27903638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 672 - 721
Target Start/End: Complemental strand, 40345080 - 40345031
Alignment:
Q  672 tcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaa 721  Q
    |||||| |||||||||||||||||||||||||  | ||||||||| ||||    
T  40345080 tcctatctataagaaaatgtcacaacttttaaggtgtagtcattgcttaa 40345031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 2011 - 1952
Alignment:
Q  215 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  2011 tgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgt 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 23354652 - 23354705
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  23354652 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 25544540 - 25544475
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 283  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||||||||| ||| ||||||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcggtgtc 25544475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 38919262 - 38919201
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgt 282  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||||||| || |||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatctgtatcggtgt 38919201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 12748746 - 12748689
Alignment:
Q  215 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatcc 272  Q
    |||||||||| ||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  12748746 tgtccgacacaacacctatgattacactgaactatgtcattttctcaaattattatcc 12748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 23354995 - 23355048
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    |||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  23354995 ccgacatgacacctatgattgcactaaattatatcattttctcaaattattatc 23355048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 24011095 - 24011042
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    ||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  24011095 ccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 30563540 - 30563474
Alignment:
Q  158 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac 224  Q
    |||||||||||||  ||| |||||||||||| ||||||||||| |||||||| | | ||||||||||    
T  30563540 ctatgaagcacaagtactccttggattagggttgtcctggtgtcggatacgcctgggtgtccgacac 30563474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 37986835 - 37986785
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    |||||| ||||||||||||||| |||||||||||||| | |||||||||||    
T  37986835 acacgatacctatgattacactcaaatatatcattttttcaaattattatc 37986785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 659 - 703
Target Start/End: Complemental strand, 3712000 - 3711956
Alignment:
Q  659 aaaataaaattggtcctatttataagaaaatgtcacaacttttaa 703  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  3712000 aaaaaaaatttggttctatttataagaaaatgtcacaacttttaa 3711956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 659 - 703
Target Start/End: Complemental strand, 39063757 - 39063713
Alignment:
Q  659 aaaataaaattggtcctatttataagaaaatgtcacaacttttaa 703  Q
    |||||||||||||||| |||||||||||||  |||||||||||||    
T  39063757 aaaataaaattggtccaatttataagaaaaattcacaacttttaa 39063713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 18571068 - 18570978
Alignment:
Q  181 gattaggggtgtcctggtgttggatacgcatcgatgtccgacac-gacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    ||||||| |||||||||||| ||||| | |||| ||| |||||| ||||| |||||||||| | || ||| ||||||||| |||||||||||    
T  18571068 gattaggcgtgtcctggtgtcggatatgtatcg-tgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 22085066 - 22085011
Alignment:
Q  216 gtccgacac-gacacctatgattacactaaaatatatcattttcttaaattattat 270  Q
    ||||||||| |||||  |||||||||||||| ||| ||||||||||||||||||||    
T  22085066 gtccgacaccgacacaaatgattacactaaattatgtcattttcttaaattattat 22085011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 671 - 722
Target Start/End: Original strand, 38496470 - 38496521
Alignment:
Q  671 gtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    ||||||||||||||||||||||| || ||||||  |||||| ||||||||||    
T  38496470 gtcctatttataagaaaatgtcagaatttttaaggtatagttattgtttaaa 38496521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 703
Target Start/End: Original strand, 40442716 - 40442747
Alignment:
Q  672 tcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||||||||||||||||||||||    
T  40442716 tcctatttataagaaaatgtcacaacttttaa 40442747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 703
Target Start/End: Original strand, 40503869 - 40503904
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||| ||||||||||||||||||||||||||||    
T  40503869 ttggtcccatttataagaaaatgtcacaacttttaa 40503904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 10535762 - 10535812
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    ||||||||| |||||||||||| || ||| ||||||||| |||||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatc 10535812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 11308004 - 11308065
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggt 280  Q
    ||||||||||||||||||||||||| || ||| ||||||| | |||||| ||||||| |||||    
T  11308004 ccgacacgacacctatgattacactgaattatgtcattttttcaaatta-tatccgtgtcggt 11308065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 34006930 - 34007044
Alignment:
Q  158 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac-gacacctatgattacactaaaatatatcattt 256  Q
    |||||||||||  ||||| |||| |||||| |||| | |||||  || ||| || | ||||| |||| |||||||||||||||||| || ||| ||| ||    
T  34006930 ctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacacgaataggtgtcccacaccgacacctatgattacactgaattatgtcaatt 34007029  T
Q  257 tcttaaattattatc 271  Q
    ||| |||||||||||    
T  34007030 tctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 644 - 703
Target Start/End: Original strand, 38214081 - 38214142
Alignment:
Q  644 tataagaaaaatctcaaaataaaatt--ggtcctatttataagaaaatgtcacaacttttaa 703  Q
    |||||||||||| |||||| ||||||  ||||| |||||||||||||  |||||||||||||    
T  38214081 tataagaaaaatttcaaaaaaaaattttggtccaatttataagaaaaattcacaacttttaa 38214142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 19574037 - 19573984
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 271  Q
    |||||||| ||||||| |||||||| || ||| | |||||||||||||||||||    
T  19574037 ccgacacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 664 - 722
Target Start/End: Original strand, 3574716 - 3574774
Alignment:
Q  664 aaaattggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||    
T  3574716 aaaattggtcctatttataagaaaatgtcacaacttttcaaatgtagttattgtttaaa 3574774  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 641 - 722
Target Start/End: Original strand, 42745510 - 42745592
Alignment:
Q  641 taatataagaaaaatctcaaaataaaatt-ggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||| |||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||| || |||| | ||||||||||    
T  42745510 taatgtaagaaaaatttcaaaaaaaaatttggtcctatttataagaaaatgtcacaatttttgaagtataattattgtttaaa 42745592  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 6574047 - 6573983
Alignment:
Q  219 cgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 283  Q
    |||||| |||||||||||||||||||| ||||||||| ||| ||||||| |||||| ||||||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcggtgtc 6573983  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 271
Target Start/End: Complemental strand, 19637889 - 19637774
Alignment:
Q  156 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac-gacacctatgattacactaaaatatatcat 254  Q
    |||||||| ||||||| ||| || |||||||||| |||| ||||| ||||| | |||| |||||||||| ||||| |||||||||| | ||  || ||||    
T  19637889 atctatgatgcacaaatactcctcggattaggggcgtcccggtgtcggatatgtatcg-tgtccgacaccgacacatatgattacattgaataatgtcat 19637791  T
Q  255 tttcttaaattattatc 271  Q
    |||||||||||||||||    
T  19637790 tttcttaaattattatc 19637774  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 666 - 722
Target Start/End: Complemental strand, 31181208 - 31181152
Alignment:
Q  666 aattggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  31181208 aattggttttatttataagaaaatgtcacaacttttaacttatagttattgtttaaa 31181152  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 42004947 - 42005003
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  42004947 ccgacacaacacctatgattacactaaattatgtcattttctcaaattattatccgt 42005003  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 723
Target Start/End: Complemental strand, 9851963 - 9851911
Alignment:
Q  671 gtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaat 723  Q
    |||||||||||||||||||||||||||||||||| | |||| |||| ||||||    
T  9851963 gtcctatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaat 9851911  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 644 - 722
Target Start/End: Complemental strand, 27442550 - 27442471
Alignment:
Q  644 tataagaaaaatctcaaaataaaa-ttggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||||||||| | |||||| |||| |||||||||||||||||||||  |||||||||||||| |||| | | ||||||||    
T  27442550 tataagaaaattttcaaaaaaaaacttggtcctatttataagaaaaaatcacaacttttaaagtatatttagtgtttaaa 27442471  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 668 - 703
Target Start/End: Complemental strand, 36437353 - 36437318
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||||||||||||||||||||||||||    
T  36437353 ttggtcctatttataagaaaatgtcacaacttttaa 36437318  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 48415728 - 48415787
Alignment:
Q  221 acacgacacctatgattacactaaaatatatcattttctt-aaattattatccgtttcgg 279  Q
    |||||||| |||||||||||||||| ||||||||||| || |||||||||||||| ||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatccgtgtcgg 48415787  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 6936402 - 6936456
Alignment:
Q  220 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||||||||||||||||||||| || ||| ||||||||| | ||||||||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccgt 6936456  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 668 - 722
Target Start/End: Complemental strand, 17971516 - 17971462
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    ||||||||||||||||||||| ||||||||||||||  |||| | ||||||||||    
T  17971516 ttggtcctatttataagaaaaagtcacaacttttaaggtatatttattgtttaaa 17971462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 703
Target Start/End: Complemental strand, 31003732 - 31003699
Alignment:
Q  670 ggtcctatttataagaaaatgtcacaacttttaa 703  Q
    ||||||||||||||||||||||||||||||||||    
T  31003732 ggtcctatttataagaaaatgtcacaacttttaa 31003699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 284
Target Start/End: Original strand, 40747707 - 40747839
Alignment:
Q  158 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac------gacacctatgattacactaaaatatat 251  Q
    |||||||||||  || || || |||||||||||||||  |||| ||| | | |||| ||||||||||      ||||||||| |||||| | || ||| |    
T  40747707 ctatgaagcacggacgctcctcggattaggggtgtccctgtgtgggacatggatcggtgtccgacaccaacatgacacctataattacattgaattatgt 40747806  T
Q  252 cattttcttaaattattatccgtttcggtgtct 284  Q
    |||||||| |||||||||||||| |||||||||    
T  40747807 cattttctcaaattattatccgtgtcggtgtct 40747839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 671 - 722
Target Start/End: Complemental strand, 17988434 - 17988383
Alignment:
Q  671 gtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||||| ||||||||||||||||||||||||||  | |||| ||||||||||    
T  17988434 gtcctacttataagaaaatgtcacaacttttaaggtgtagttattgtttaaa 17988383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 23440051 - 23440004
Alignment:
Q  236 ttacactaaaatatatcattttcttaaattattatccgtttcggtgtc 283  Q
    |||||||||| ||||||||||||| |||||||||| ||| ||||||||    
T  23440051 ttacactaaattatatcattttctcaaattattatacgtgtcggtgtc 23440004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 12040688 - 12040734
Alignment:
Q  224 cgacacctatgattacactaaaat-atatcattttcttaaattatta 269  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  12040688 cgacacctatgattatactgaaattatatcattttcttaaattatta 12040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 7988388 - 7988504
Alignment:
Q  155 aatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacga-cacctatgattacactaaaatatatca 253  Q
    ||||||||||||||| | ||| |||||| |||   |||| |||||||| ||||| || | |||||||||| | ||| |||||||||| | || ||| |||    
T  7988388 aatctatgaagcacataaactccttggactagacatgtcatggtgttgaatacgtattg-tgtccgacaccaacacttatgattacattgaattatgtca 7988486  T
Q  254 ttttcttaaattattatc 271  Q
     |||||||||||||||||    
T  7988487 ctttcttaaattattatc 7988504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 21145526 - 21145469
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttctt-aaattattatccgt 274  Q
    |||||||||| |||||||||||||| || ||| ||||||| || ||||||||||||||    
T  21145526 ccgacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgt 21145469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 722
Target Start/End: Original strand, 3016 - 3070
Alignment:
Q  668 ttggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    ||||||||||||||||||||||||||||||||||||  | |||| ||||||||||    
T  3016 ttggtcctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaa 3070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 644 - 722
Target Start/End: Complemental strand, 39010 - 38932
Alignment:
Q  644 tataagaaaaatctcaaaataaaattggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 722  Q
    |||||||||| |||||||| ||  |||||| |||||||||||||| ||||||| ||||||  |||| | ||||||||||    
T  39010 tataagaaaattctcaaaaaaagtttggtcttatttataagaaaaagtcacaatttttaagatatatttattgtttaaa 38932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 4461 - 4404
Alignment:
Q  222 cacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 279  Q
    ||||||| ||||||| ||||| || |||||||| |||||||||||||||| |||||||    
T  4461 cacgacatctatgatgacactgaattatatcatattcttaaattattatctgtttcgg 4404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 8053 - 8109
Alignment:
Q  218 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 274  Q
    ||||||||| ||||||| ||||||| || ||| ||||||||| ||||||||||||||    
T  8053 ccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgt 8109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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