View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_13 (Length: 502)
Name: NF1063_low_13
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 5024596 - 5025089
Alignment:
| Q |
1 |
cggtaaaccttgttacttgatgatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaa |
100 |
Q |
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| T |
5024596 |
cggtaaaccttgttacctgatgatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaa |
5024695 |
T |
|
| Q |
101 |
ttggagatttactaccctgagttgaactcaacctctcagctgtgacagatgtcgggttcttctgccgtgttcttggactttgtacattcaagctttcacc |
200 |
Q |
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| T |
5024696 |
ttggagatttactaccctgagttgaactcaacctctcagctgtgacagatgtcgggttcttctgccgtgttcttggactttgtacattcaagctttcacc |
5024795 |
T |
|
| Q |
201 |
gacactactattactcgtattgtcatacggagaatttgaagcctgatcacttgcagtatctaatgattctttgtatctgtgcattgcttcaagaatctgt |
300 |
Q |
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| T |
5024796 |
gacactactattactcgtattgtcatacggagaatttgaagtctgatcacttgcagtatctaatgattctttgtatctgtgcattgcttcaagaatctgt |
5024895 |
T |
|
| Q |
301 |
ttaagggctctaagatcctttccggattttttgaactctagatccgccatccttttttcaatttcaccatagaccgagagggaccgatttgaggcctttg |
400 |
Q |
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| T |
5024896 |
ttaagggctctaagatcctttccggattttttgaactctagatccgccatccttttttcaatttcaccatagaccgagagggaccgatttgaggcctttg |
5024995 |
T |
|
| Q |
401 |
ttgaaggttcgttattcttggaaaattgtgaatatggtgtctcatttgtgattgaaccatccctcctagattgaagcatgtttgtccctatgct |
494 |
Q |
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| T |
5024996 |
ttgaaggttcgttattcttggaaaattgtgaatatggtgtctcatttgtgattgaaccatccctcctagattgaagcatgtttgtccctttgct |
5025089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 275 - 371
Target Start/End: Original strand, 4559307 - 4559403
Alignment:
| Q |
275 |
atctgtgcattgcttcaagaatctgtttaagggctctaagatcctttccggattttttgaactctagatccgccatccttttttcaatttcaccata |
371 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||| ||| |||||| |||||||| ||||| |
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| T |
4559307 |
atctctgcattgcttcaagaatctgtttaagtgctctaagatcctttccggactttttgaactcgagttcccccaaccttttctcaatttcgccata |
4559403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 4559078 - 4559172
Alignment:
| Q |
22 |
gatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttactacc |
116 |
Q |
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|||||| || ||||||||| ||||| |||| || |||||| | |||||| | || |||||||||||| ||||||||||||| |||||||||| |
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| T |
4559078 |
gatttatcaggaattggcagttctgtagaaggaggattattggcttttctagtcacttttgttggtttcgtgatgacaattggtaatttactacc |
4559172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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