View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_15 (Length: 480)
Name: NF1063_low_15
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 114 - 365
Target Start/End: Original strand, 28839664 - 28839916
Alignment:
| Q |
114 |
agattgattttacgaagagttcttatatagaagcctcacgctacctttccaaccatattcattcaaatactatatatgtttgtataacataattgattat |
213 |
Q |
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| T |
28839664 |
agattgattttacgaagagttcttatatagaagcctcacgctacctttccaaccatattcattcaaatactatatatgtttgtataacataattgattat |
28839763 |
T |
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| Q |
214 |
ggtgacatgttctgaacggagtacacaaactatggcttcatttttccaaggtcgatactatatgtataactaacacaagttattcctatttttccatcac |
313 |
Q |
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| T |
28839764 |
ggtgacatgttctgaacggagtacacaaactatggcttcatttttccaaggtcgatactatatgtataactaacacaagttattcctatttttccatcac |
28839863 |
T |
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| Q |
314 |
aaattgcatacata-nnnnnnngcttttctcttcaattaaatgttttgtatta |
365 |
Q |
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| T |
28839864 |
aaattgcatacatattttttttgcttttctcttcaattaaatgttttctatta |
28839916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 116 - 276
Target Start/End: Original strand, 22728171 - 22728329
Alignment:
| Q |
116 |
attgattttacgaagagttcttatatagaagcctcacgctacctttccaaccatattcattcaaatactatatatgtttgtataacataattgattatgg |
215 |
Q |
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| T |
22728171 |
attgattttgcaaagagttcttata--gaagcctcacgctaccttcccaacaatattcattcaaatactatatatgtttgtatagcattattgattatgg |
22728268 |
T |
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| Q |
216 |
tgacatgttctgaacggagtacacaaactatggcttcatttttccaaggtcgatactatat |
276 |
Q |
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| T |
22728269 |
tgacatgttatgaacggagtagacaaactatggcttcatttttccaaggtcgatactatat |
22728329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 28839546 - 28839605
Alignment:
| Q |
12 |
taatatgttgatctgatctatataaatgatttgtgttctctttaacaatacaatcaaagg |
71 |
Q |
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| T |
28839546 |
taatatgttgatctgatctatataaatgatttgtgttctctttaacaatacaatcaaagg |
28839605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 22728086 - 22728131
Alignment:
| Q |
28 |
tctatataaatgattt--gtgttctctttaacaatacaatcaaagg |
71 |
Q |
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| T |
22728086 |
tctatataaatgatttttgtgttctctttaacaatacaatcaaagg |
22728131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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