View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_16 (Length: 459)
Name: NF1063_low_16
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 27 - 430
Target Start/End: Original strand, 32203208 - 32203611
Alignment:
| Q |
27 |
aattaacctctgtgtatcaagtacctgaattcctttaatatgtgggacattacctattctgtcattgttttttcctttctgtttgtaggaaactgattta |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203208 |
aattaacctctgtgtatcaagtacctgaattcctttaatatgtgggacattacctattctgtcattgttttttcctttctgtttgtaggaaactgattta |
32203307 |
T |
|
| Q |
127 |
tcatttatgtgcttgattttaaacccacttatcagatgattgaagaatgactttaacgaaacggtatgtgctgagattgttcatatcaataaagtacatt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32203308 |
tcatttatgtgcttgattttaaacccacttatcagatgattgaagaatgactttaacgaaacggtatgtgctgagattgttcatatcaataaagtacatt |
32203407 |
T |
|
| Q |
227 |
actgcaaatgtggtagatcgaaacagcggacgaatagtagcaacatcatccaccgcagaacatgacatcaagcagtctctcgagtgtggccggccctgca |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32203408 |
actgcaaatgtggtagatcgaaacagcggacgaatagtagcaacatcatccaccgctgaacatgacatcaagcagtctctcgagtgtggccggtcctgca |
32203507 |
T |
|
| Q |
327 |
atgcaaaagcagctgctgttgttggggaagtattggccagacggctcaaagttgaggggcttaatgaaggagaaggaagaggtattcatgtaaatgttaa |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32203508 |
atgcaaaagcagctgctgttgttggggaagtattggccagacggctcaaagttgaggggcttaatgaaggagaaggaagaggtattcatgtaaatgtaaa |
32203607 |
T |
|
| Q |
427 |
taag |
430 |
Q |
| |
|
|||| |
|
|
| T |
32203608 |
taag |
32203611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 27 - 430
Target Start/End: Complemental strand, 35566784 - 35566382
Alignment:
| Q |
27 |
aattaacctctgtgtatcaagtacctgaattcctttaatatgtgggacattacctattctgtcattgttttttcctttctgtttgtaggaaactgattta |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35566784 |
aattaacctctgtgtatcaagtacctgaattcctttaatatgtgggacattacctattctgtcattgttttttcctttctgttcgtaggaaactgattta |
35566685 |
T |
|
| Q |
127 |
tcatttatgtgcttgattttaaacccacttatcagatgattgaagaatgactttaacgaaacggtatgtgctgagattgttcatatcaataaagtacatt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35566684 |
tcatttatgtgcttgattttaaacccacttatcagatgattgaagaatgactttaacgaaacggtatgtgctgagattgttcatatcaataaagtacatt |
35566585 |
T |
|
| Q |
227 |
actgcaaatgtggtagatcgaaacagcggacgaatagtagcaacatcatccaccgcagaacatgacatcaagcagtctctcgagtgtggccggccctgca |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
35566584 |
actgcaaatgtggtagatcgaaacagcggacgaatagtagcaacatcatccaccgcagaacatgacatcaagcagtctctcgagtgtggccggccctg-a |
35566486 |
T |
|
| Q |
327 |
atgcaaaagcagctgctgttgttggggaagtattggccagacggctcaaagttgaggggcttaatgaaggagaaggaagaggtattcatgtaaatgttaa |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
35566485 |
atgcaaaagcagctgctgttgttggggaagtattggccagacggctcaaagttgaggggcttaatgaaggagaaggaagaggtattcatgtaaatgtaaa |
35566386 |
T |
|
| Q |
427 |
taag |
430 |
Q |
| |
|
|||| |
|
|
| T |
35566385 |
taag |
35566382 |
T |
|
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