View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_low_2 (Length: 740)

Name: NF1063_low_2
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_low_2
NF1063_low_2
[»] chr1 (15 HSPs)
chr1 (395-629)||(42958043-42958276)
chr1 (460-674)||(18506628-18506842)
chr1 (115-338)||(18504928-18505158)
chr1 (403-612)||(46352351-46352555)
chr1 (421-626)||(7486767-7486972)
chr1 (110-334)||(19193461-19193684)
chr1 (421-529)||(15722784-15722893)
chr1 (105-329)||(7487055-7487288)
chr1 (159-334)||(26703841-26704009)
chr1 (115-329)||(46352068-46352290)
chr1 (116-278)||(42958398-42958568)
chr1 (105-159)||(46757874-46757928)
chr1 (421-472)||(19193323-19193374)
chr1 (105-147)||(15723129-15723171)
chr1 (115-157)||(44201495-44201537)
[»] scaffold0159 (2 HSPs)
scaffold0159 (396-629)||(36329-36562)
scaffold0159 (126-278)||(36669-36829)
[»] chr2 (9 HSPs)
chr2 (396-629)||(5782866-5783099)
chr2 (395-594)||(13363959-13364155)
chr2 (425-612)||(29468120-29468305)
chr2 (395-608)||(25417557-25417768)
chr2 (115-334)||(25417270-25417498)
chr2 (126-278)||(5783206-5783366)
chr2 (105-226)||(13364310-13364439)
chr2 (238-328)||(25546428-25546519)
chr2 (423-466)||(25546614-25546657)
[»] chr6 (24 HSPs)
chr6 (395-674)||(18767060-18767336)
chr6 (395-674)||(21392662-21392941)
chr6 (395-594)||(20025226-20025424)
chr6 (421-612)||(14463994-14464183)
chr6 (421-606)||(15906468-15906651)
chr6 (421-610)||(31569786-31569974)
chr6 (395-565)||(21683646-21683811)
chr6 (431-565)||(20881416-20881549)
chr6 (421-605)||(18715777-18715958)
chr6 (514-674)||(18785269-18785428)
chr6 (421-543)||(23160240-23160363)
chr6 (113-334)||(23160441-23160668)
chr6 (115-329)||(18767404-18767625)
chr6 (110-334)||(31569475-31569708)
chr6 (110-329)||(18715456-18715685)
chr6 (115-312)||(20025435-20025641)
chr6 (110-329)||(15906745-15906974)
chr6 (110-159)||(18801288-18801337)
chr6 (159-334)||(21683413-21683582)
chr6 (105-334)||(14463669-14463908)
chr6 (159-334)||(20881645-20881814)
chr6 (243-328)||(14602679-14602765)
chr6 (162-213)||(21393111-21393158)
chr6 (126-159)||(21393173-21393206)
[»] chr8 (13 HSPs)
chr8 (421-612)||(7964315-7964504)
chr8 (421-612)||(8224233-8224422)
chr8 (395-608)||(43974084-43974297)
chr8 (395-589)||(22932518-22932710)
chr8 (115-334)||(22932232-22932459)
chr8 (115-329)||(7964598-7964822)
chr8 (442-543)||(16046675-16046777)
chr8 (110-329)||(8223913-8224141)
chr8 (115-159)||(13586141-13586185)
chr8 (115-159)||(43974520-43974564)
chr8 (249-334)||(43974354-43974440)
chr8 (163-214)||(43974457-43974504)
chr8 (159-226)||(44967665-44967728)
[»] chr5 (11 HSPs)
chr5 (421-612)||(42882439-42882628)
chr5 (403-629)||(38925910-38926134)
chr5 (431-565)||(22545234-22545367)
chr5 (461-599)||(32726246-32726383)
chr5 (194-320)||(32726599-32726725)
chr5 (159-334)||(22545462-22545631)
chr5 (110-317)||(42882732-42882948)
chr5 (159-329)||(38925684-38925849)
chr5 (113-226)||(35329369-35329490)
chr5 (115-155)||(38925628-38925668)
chr5 (113-159)||(35328972-35329018)
[»] chr4 (11 HSPs)
chr4 (395-608)||(43592995-43593211)
chr4 (421-606)||(19111485-19111668)
chr4 (421-479)||(52374763-52374821)
chr4 (115-329)||(43593278-43593496)
chr4 (421-529)||(50377784-50377893)
chr4 (110-329)||(52374439-52374668)
chr4 (159-329)||(19111760-19111928)
chr4 (115-159)||(43593654-43593698)
chr4 (242-334)||(50377613-50377706)
chr4 (159-188)||(18811107-18811136)
chr4 (110-151)||(19111948-19111989)
[»] scaffold0557 (2 HSPs)
scaffold0557 (421-612)||(6942-7130)
scaffold0557 (110-329)||(6618-6850)
[»] scaffold0041 (2 HSPs)
scaffold0041 (395-612)||(31700-31913)
scaffold0041 (115-266)||(31988-32147)
[»] chr7 (11 HSPs)
chr7 (403-629)||(3568983-3569207)
chr7 (420-610)||(39702519-39702708)
chr7 (421-525)||(1966765-1966870)
chr7 (105-334)||(39702787-39703025)
chr7 (159-329)||(3568757-3568922)
chr7 (109-147)||(1966491-1966529)
chr7 (115-155)||(3568701-3568741)
chr7 (242-334)||(1966594-1966687)
chr7 (159-188)||(12315066-12315095)
chr7 (159-188)||(18535911-18535940)
chr7 (159-192)||(48520172-48520205)
[»] chr3 (2 HSPs)
chr3 (421-610)||(6506469-6506655)
chr3 (117-329)||(7567158-7567378)
[»] scaffold0214 (6 HSPs)
scaffold0214 (395-612)||(22186-22405)
scaffold0214 (115-334)||(21899-22127)
scaffold0214 (453-610)||(1577-1733)
scaffold0214 (159-329)||(28899-29066)
scaffold0214 (421-462)||(28775-28816)
scaffold0214 (421-462)||(16687-16728)
[»] scaffold0054 (2 HSPs)
scaffold0054 (420-607)||(50165-50351)
scaffold0054 (159-329)||(49922-50088)
[»] scaffold0590 (2 HSPs)
scaffold0590 (395-503)||(9481-9588)
scaffold0590 (162-278)||(9264-9376)
[»] scaffold0726 (2 HSPs)
scaffold0726 (421-543)||(5175-5294)
scaffold0726 (110-159)||(5508-5557)
[»] scaffold0760 (1 HSPs)
scaffold0760 (116-159)||(70-113)
[»] scaffold0283 (1 HSPs)
scaffold0283 (159-226)||(13799-13862)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 6e-79; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 395 - 629
Target Start/End: Complemental strand, 42958276 - 42958043
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  42958276 ctttgataacacatccaagtcttgcaaa-ggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatacattgcaa 42958178  T
Q  495 tatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 593  Q
    ||||||| | ||| || ||||||||||||||| |||||||||||||||  |||||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  42958177 tattttttattgagatagtcaatgtaacatagtaagtggaatgttaat--taaactggggcatataggtgatgttcttgtttgagaaattttggagaaat 42958080  T
Q  594 agaagggaagagcccctg-ctacagccaccccttccc 629  Q
    |||||| ||||||||||| ||||| ||||||||||||    
T  42958079 agaaggcaagagcccctgcctacaaccaccccttccc 42958043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 460 - 674
Target Start/End: Original strand, 18506628 - 18506842
Alignment:
Q  460 acacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatat 558  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||  |||||||||||||||||||||||||||||||||  |||||| ||||||    
T  18506628 acacattagtcatatcacttattcatactttgcgatattttttaatgaaaaagtcaatgtaacatagcaagtggaatgttaatta--aactggtgcatat 18506725  T
Q  559 aagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctg-ctacagccaccccttcccnnnnnnncattcacctatcgacatttcc 657  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||  ||| ||||| ||||||||||||       ||||||| || | || |||||    
T  18506726 aagtgatgttcttgtttgagaaatcttggagaaataaaaggcaagagcaactgcctacaaccaccccttccccttttttcattcacgtacccacctttcc 18506825  T
Q  658 tatcctaggattcaaat 674  Q
    |||| ||||||||||||    
T  18506826 tatcgtaggattcaaat 18506842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 115 - 338
Target Start/End: Original strand, 18504928 - 18505158
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggagga 202  Q
    |||| ||||||||||||||||||||||||||||||||||||||||            |||||||||| || | |||||||||||    ||||||||||||    
T  18504928 aaaatatgtaagatatgtaattcatgcatttctttaacatggagttacgtaatatatacttagttttatggtacatactcatct----atctatggagga 18505023  T
Q  203 tgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttacaaaaccagtacacata 302  Q
    ||||||||||| ||| ||| |||| ||||   ||||||||||||| ||||||||||||| |||| ||||| ||||| ||||||| |||||||||||||||    
T  18505024 tgaatatgcattaaacatgagtgacatttatgggggtgggtttgatgaagacattaaatctttctcatctctaacacaatttac-aaaccagtacacata 18505122  T
Q  303 tgctttatattatttctccagccattttagtcggtc 338  Q
    |||| ||||||||||||| |||||||| ||||||||    
T  18505123 tgctctatattatttctcgagccatttgagtcggtc 18505158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 403 - 612
Target Start/End: Original strand, 46352351 - 46352555
Alignment:
Q  403 acacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttc 502  Q
    ||||||||||||| |  |||| ||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||     
T  46352351 acacatccaagtcttg-aaaatgacaaagacatttcaaaaatagtgaaagaatatttacacattagtcatatcacttattcataatttgtgatatttttg 46352449  T
Q  503 actg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaaggga 601  Q
    | || ||| |||||||||||||||||||| ||||||||||  |||| ||| |   ||||||||| ||||||||| ||||||||| |||||||| |||| |    
T  46352450 attgaaaaagtcaatgtaacatagcaagttgaatgttaat--taaattgggg---ataagtgatattcttgttttagaaatctttgagaaataaaaggca 46352544  T
Q  602 agagcccctgc 612  Q
    |||||||||||    
T  46352545 agagcccctgc 46352555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 421 - 626
Target Start/End: Complemental strand, 7486972 - 7486767
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||  |||| ||||  ||||||||| |||||||| | || ||| |||||||||    
T  7486972 aaaggacggagacatttcaaaaagagtgaaacaatgtttacatattagtcgcatcatttataaatactttgcaatatttttgattgaaaaagtcaatgta 7486873  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct-gctacagc 618  Q
    ||||||||||||||||||||||  |||  |||   ||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||  ||||| |    
T  7486872 acatagcaagtggaatgttaat--taacttgggatatatatgtgatgttcttgtttgagaaattttggagtaatagaaggcaagagcccctacctacaac 7486775  T
Q  619 cacccctt 626  Q
    ||||||||    
T  7486774 cacccctt 7486767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 110 - 334
Target Start/End: Complemental strand, 19193684 - 19193461
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatgga-gtacttagttttgtgatgcatactcatctatctatctatggaggatgaata 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    ||||||  || |||||||||||    
T  19193684 ttgataaaaaatgtaagatatgtaattcatgcacttctttaacatggatatacttagttttgtgatgcatactc----atctatacatagaggatgaata 19193589  T
Q  209 tgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttac--aaaaccagtacacatatgct 306  Q
    ||||| ||| ||| ||||   ||   ||| | ||||||| ||||||||||||| |||||| ||  ||||| |||||||  ||||  ||||||||||||||    
T  19193588 tgcatgaaacatgagtgaccgttatggggattggtttgatgaagacattaaatctttcccttcgctaacacaatttacagaaaaatagtacacatatgct 19193489  T
Q  307 ttatattatttctccagccattttagtc 334  Q
     ||||||||||||| |||||||| ||||    
T  19193488 ctatattatttctcaagccatttgagtc 19193461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 421 - 529
Target Start/End: Complemental strand, 15722893 - 15722784
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||| ||| | || ||| |||||||||    
T  15722893 aaaggacgaagacattttaaaaagagtgaaagaatgtttacacattaggcaaatcaccttttcatactttgcgatatatttgattgaaaaagtcaatgta 15722794  T
Q  520 acatagcaag 529  Q
    ||||||||||    
T  15722793 acatagcaag 15722784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 105 - 329
Target Start/End: Complemental strand, 7487288 - 7487055
Alignment:
Q  105 caaatttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctat 192  Q
    |||| ||||||||||||||||| ||||||||| ||||| |||||| |||||||||            |||||||||||||||||||||||||||||||||    
T  7487288 caaacttgataaaaaatgtaagttatgtaatttatgcacttctttgacatggagttacttaatatatacttagttttgtgatgcatactcatctatctat 7487189  T
Q  193 ctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttaca-aaac 291  Q
        ||||||||||||| ||| ||| ||| |||| ||||   ||||||||||||| |||||| |||||| ||||  |||  ||| | |||||||| |||     
T  7487188 ----ggaggatgaatatacatgaaacatgagtgacatttatgggggtgggtttgatgaagactttaaatctttcatatccttaaaacaatttacagaaat 7487093  T
Q  292 cagtacacatatgctttatattatttctccagccattt 329  Q
     |||||| ||||||| ||||||||||||| ||||||||    
T  7487092 tagtacaaatatgctctatattatttctcgagccattt 7487055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 159 - 334
Target Start/End: Original strand, 26703841 - 26704009
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacatta 258  Q
    |||||||||||||||||||||||||||| |||||    ||||||||||||||||| ||| ||| |||| ||||     ||||||  ||| ||| ||||||    
T  26703841 tacttagttttgtgatgcatactcatctttctat----ggaggatgaatatgcatgaaacatgagtgacatttat---ggtgggactgatgaaaacatta 26703933  T
Q  259 aatttttcccatctataacataatttacaaaaccagtacacatatgctttatattatttctccagccattttagtc 334  Q
    ||| || ||||||| ||| | |||||||| ||||||||| |||||||| ||||||||||||| |||||||| ||||    
T  26703934 aatcttccccatctctaagacaatttacataaccagtacgcatatgctctatattatttctcgagccatttaagtc 26704009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 115 - 329
Target Start/End: Original strand, 46352068 - 46352290
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggagga 202  Q
    |||| ||||||||||||||||||||||| ||||||||||||| ||            |||| |||||||||||||| |||||||    ||||||||||||    
T  46352068 aaaatatgtaagatatgtaattcatgcacttctttaacatggtgttacttaatatatactttgttttgtgatgcatcctcatct----atctatggagga 46352163  T
Q  203 tgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttaca-aaaccagtacacat 301  Q
    ||||||||||||||| ||| | || ||||   |||||||| |||| ||||||| |||||  ||| || |  ||||| |||||||| ||||||||||||||    
T  46352164 tgaatatgcataaaacatgagagacatttatgggggtgggattgatgaagaca-taaatcattctcagcgctaacacaatttacagaaaccagtacacat 46352262  T
Q  302 atgctttatattatttctccagccattt 329  Q
    ||| | ||||||||||||| ||||||||    
T  46352263 atgttgtatattatttctcgagccattt 46352290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 116 - 278
Target Start/End: Complemental strand, 42958568 - 42958398
Alignment:
Q  116 aaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggaggat 203  Q
    ||||||||||||||||||||||||||| ||||||||||||||||            | |||||||||||||||||||||     |||| |||||||||||    
T  42958568 aaaaatgtaagatatgtaattcatgcacttctttaacatggagttacttaatatataattagttttgtgatgcatactc----gtctaactatggaggat 42958473  T
Q  204 gaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataaca 278  Q
    |||||||||| ||| ||| |||| ||||   |||| |||||||| ||||||||||||| |||||||||| |||||    
T  42958472 gaatatgcatgaaacatgagtgacatttatgggggcgggtttgatgaagacattaaatatttcccatctctaaca 42958398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 46757928 - 46757874
Alignment:
Q  105 caaatttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt 159  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46757928 caaatttgataaaaaatgtaagatatgtaattcatgcacttctttaacatggagt 46757874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 472
Target Start/End: Complemental strand, 19193374 - 19193323
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcat 472  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  19193374 aaaggacgaagacattttaaaaagagtaaaagaatatttacacattagtcat 19193323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 15723171 - 15723129
Alignment:
Q  105 caaatttgataaaaaatgtaagatatgtaattcatgcatttct 147  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  15723171 caaatttgataaaaaatgtaagatatgtaattcatgcacttct 15723129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 44201537 - 44201495
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatgga 157  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  44201537 aaaaaatgtaagatatgtaattcatgcacttctttaacatgga 44201495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 142; Significance: 4e-74; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 396 - 629
Target Start/End: Complemental strand, 36562 - 36329
Alignment:
Q  396 tttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaa-gaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    |||||||||||||| ||||| | |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |    
T  36562 tttgataacacatcaaagtcttgcaaa-ggacgtagacatttcaaaaagagtgaaaagaatgtttacacattagtcatgtcacttattcatactttgcaa 36464  T
Q  495 tatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 593  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  36463 tatttttcattgaaaaagtcaatgtaacatagcaagtggaatgttaatta--aactggggcatataagtgatgttcttgtttgagaaatcttggagaaat 36366  T
Q  594 agaagggaagagcccct-gctacagccaccccttccc 629  Q
    |||| | ||||||||||  ||||| ||||||||||||    
T  36365 agaatgcaagagcccctacctacaaccaccccttccc 36329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 278
Target Start/End: Complemental strand, 36829 - 36669
Alignment:
Q  126 gatatgtaattcatgcatttctttaacatggag------------tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcat 213  Q
    |||||||||||||||||||||||||||||| ||            ||||||||||||||||||||||||    |||||| ||||||||||||||||||||    
T  36829 gatatgtaattcatgcatttctttaacatgaagttacttaatatatacttagttttgtgatgcatactc----atctatatatggaggatgaatatgcat 36734  T
Q  214 aaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataaca 278  Q
     ||| ||| |||| ||||   |||| || ||||| ||||||| ||||| |||||||||| |||||    
T  36733 gaaatatgagtgacatttatgggggcggatttgatgaagacaataaatctttcccatctctaaca 36669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 4e-74; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 396 - 629
Target Start/End: Complemental strand, 5783099 - 5782866
Alignment:
Q  396 tttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaa-gaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    |||||||||||||| ||||| | |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |    
T  5783099 tttgataacacatcaaagtcttgcaaa-ggacgtagacatttcaaaaagagtgaaaagaatgtttacacattagtcatgtcacttattcatactttgcaa 5783001  T
Q  495 tatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 593  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  5783000 tatttttcattgaaaaagtcaatgtaacatagcaagtggaatgttaatta--aactggggcatataagtgatgttcttgtttgagaaatcttggagaaat 5782903  T
Q  594 agaagggaagagcccct-gctacagccaccccttccc 629  Q
    |||| | ||||||||||  ||||| ||||||||||||    
T  5782902 agaatgcaagagcccctacctacaaccaccccttccc 5782866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 395 - 594
Target Start/End: Complemental strand, 13364155 - 13363959
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  13364155 ctttgataacacatccaagtctttcaaa-ggacgaagacatttcaaaaagagtgaaaaaatatttacacattaatcatatcacttattcatactttgcga 13364057  T
Q  495 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 593  Q
    ||||||| | || ||| |||||||||||||| |||||| ||||||||||   |||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  13364056 tatttttgattgaaaaagtcaatgtaacataacaagtgaaatgttaatt---aactggggcatataagtggtgttcttgtttgacaaatcttggagaaat 13363960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 425 - 612
Target Start/End: Complemental strand, 29468305 - 29468120
Alignment:
Q  425 gacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgtaacat 523  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||| | || ||| |||||||| ||||    
T  29468305 gacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgcgatatttttgattgaaaaagtcaatgtgacat 29468207  T
Q  524 agcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 612  Q
    ||||||||||||||||||  |||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  29468206 agcaagtggaatgttaat--taaactggggcatataattgatgttgttgtttgagaaatgttggagaaatagaaggcaagagcgcctgc 29468120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 395 - 608
Target Start/End: Original strand, 25417557 - 25417768
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  25417557 ctttgataacacatccaagtcttgcaaa-ggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcacttattcatactttgaga 25417655  T
Q  495 tatttttcactg--aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaa 592  Q
    ||||||| | ||  ||| ||  ||||||||||||||||||||||||||    || |||| |||||||||||||||| ||||||||||||| |||||| ||    
T  25417656 tatttttgattgaaaaaagttgatgtaacatagcaagtggaatgttaa--ccaatctggggcatataagtgatgttattgtttgagaaattttggag-aa 25417752  T
Q  593 tagaagggaagagccc 608  Q
    || |||| ||||||||    
T  25417753 taaaaggcaagagccc 25417768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 115 - 334
Target Start/End: Original strand, 25417270 - 25417498
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggagga 202  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||            |||||| ||||||||||||||||||||||||||    ||||||    
T  25417270 aaaaaatgtaagatacgtaactcatgcacttctttaacatggagttatttaatacatacttaggtttgtgatgcatactcatctatctat----ggagga 25417365  T
Q  203 tgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttaca-aaaccagtacacat 301  Q
    ||||||||||| ||| ||| | || | ||   ||||||||||||| ||||||||||||||||||||| |  |||||| ||||||| ||||||||||| ||    
T  25417366 tgaatatgcatgaaacatgagagacagttatgggggtgggtttgatgaagacattaaatttttcccagcgctaacatgatttacagaaaccagtacagat 25417465  T
Q  302 atgctttatattatttctccagccattttagtc 334  Q
    ||||| ||||||||||||| |||||||| ||||    
T  25417466 atgctctatattatttctcaagccatttgagtc 25417498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 278
Target Start/End: Complemental strand, 5783366 - 5783206
Alignment:
Q  126 gatatgtaattcatgcatttctttaacatggag------------tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcat 213  Q
    |||||||||||||||||||||||||||||| ||            ||||||||||||||||||||||||    |||||| ||||||||||||||||||||    
T  5783366 gatatgtaattcatgcatttctttaacatgaagttacttaatatatacttagttttgtgatgcatactc----atctatatatggaggatgaatatgcat 5783271  T
Q  214 aaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataaca 278  Q
     ||| ||| |||| ||||   |||| || ||||| ||||||| ||||| |||||||||| |||||    
T  5783270 gaaatatgagtgacatttatgggggcggatttgatgaagacaataaatctttcccatctctaaca 5783206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 13364439 - 13364310
Alignment:
Q  105 caaatttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggag------------tacttagttttgtgatgcatactcatctatctat 192  Q
    |||| |||||||||||||||||||||| ||| |||||| |||||||||||||||            ||| ||||||||||||||||||||    ||||||    
T  13364439 caaacttgataaaaaatgtaagatatgcaatccatgcacttctttaacatggagttaattaatatatacgtagttttgtgatgcatactc----atctat 13364344  T
Q  193 ctatggaggatgaatatgcataaaaaatgtgtga 226  Q
     ||||||||||||||||| |||||| ||| ||||    
T  13364343 atatggaggatgaatatgaataaaacatgagtga 13364310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 25546428 - 25546519
Alignment:
Q  238 gtgggtttgaggaagacattaaatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccatt 328  Q
    ||||||||||  ||||| |||||| |||||||    ||||| |||||||| |||| | |||||||||||||||||||||||||| |||||||    
T  25546428 gtgggtttgataaagactttaaatctttcccagtgctaacacaatttacagaaactaatacacatatgctttatattatttctcaagccatt 25546519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 25546614 - 25546657
Alignment:
Q  423 aggacgaagacatttcaaaaagagtgaaagaatgtttacacatt 466  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||    
T  25546614 aggacaaagacatctcaaacagagtgaaagaatgtttacacatt 25546657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 2e-73; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 395 - 674
Target Start/End: Complemental strand, 18767336 - 18767060
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    |||| ||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18767336 ctttaataacacattcaagtcttgcaaa-ggacgaagacatttcaaaaagagtgaaagaatgttttcacattagtcatatcacttattcatactttgcga 18767238  T
Q  495 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 593  Q
    ||||||| | || ||| ||||||||||||||||||| |||||||||||  |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  18767237 tatttttgattgaaaaggtcaatgtaacatagcaagaggaatgttaat--taaactggagcatataagtgatattgttgtttgagaaatcttggagaaat 18767140  T
Q  594 agaagggaagagcccctg-ctacagccaccccttcccnnnnnnncattcacctatcgacatttcctatcctaggattcaaat 674  Q
    |||| |||| ||||| || ||||| ||||||||||||       ||||||| || | || ||||||||||||||||||||||    
T  18767139 agaa-ggaaaagcccatgcctacaaccaccccttccc-atttttcattcacgtacctacctttcctatcctaggattcaaat 18767060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 395 - 674
Target Start/End: Complemental strand, 21392941 - 21392662
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    ||||||||||||||| ||||| | |||| |||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |    
T  21392941 ctttgataacacatctaagtcttgcaaa-ggacgaaggcatttcaaaaagagtgaaagaatgttaagacattagtcatgtcacttattcatactttgcaa 21392843  T
Q  495 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 593  Q
    |||| ||||  | |||  ||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  21392842 tattcttcatggaaaaattcaatgtaacatagcaagtggaatgttaat--taaactggggcatataagttatgttcttgtttgagaaatcttggagaaat 21392745  T
Q  594 agaagggaagagcccctg-ctacagccaccccttccc-nnnnnnncattcacctatcgacatttcctatcctaggattcaaat 674  Q
    |||||| ||||||||||| ||||| ||||||||||||        ||||||| || | || ||||||||||||||||||||||    
T  21392744 agaaggcaagagcccctgcctacaaccaccccttcccttttttttcattcacgtacccacctttcctatcctaggattcaaat 21392662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 395 - 594
Target Start/End: Complemental strand, 20025424 - 20025226
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    ||||||||| ||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  20025424 ctttgataaaacatccaagtcttgcaaa-ggacgaagacatttcaaaaagaatgaaagaatgtttacacattagtcatatcacttattcatagtttgcga 20025326  T
Q  495 tatttttc-actgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaa 592  Q
    |||||||  | |||||  |||||||||||||||||| | || |||||||||  |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  20025325 tatttttttattgaaaaagtcaatgtaacatagcaaattgactgttaatta--aactggggcatataagtgatattcttgtttgagaaatcttggagaaa 20025228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 421 - 612
Target Start/End: Original strand, 14463994 - 14464183
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||| | || ||| | ||||||     
T  14463994 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgagatatttttaattgaaaaagccaatgtg 14464092  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 612  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  14464093 acatagcaagtggaatgttaat--taaactggggcatataattgatgttgttgtttgagaaatcttggagaaatagaaggcaagagcacctgc 14464183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 421 - 606
Target Start/End: Complemental strand, 15906651 - 15906468
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||| |||||||||| | || ||| ||||||||     
T  15906651 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatataactt-ctcatacttttcgatatttttgattgaaaaagtcaatgtg 15906553  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagc 606  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||| ||| ||||||| ||||| |||||||||||||||| ||||||    
T  15906552 acatagcaagtggaatgttaat--taaactggggcatataattgaggttgttgtttgcgaaatgttggagaaatagaaggcaagagc 15906468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 421 - 610
Target Start/End: Original strand, 31569786 - 31569974
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||||||  |||| ||||  ||||||||| |||||||| | || ||| |||||||||    
T  31569786 aaaggacaaagacatttcaaaaagagtgaaacaatgtttacatattagtcgcatcatttataaatactttgcaatatttttgattgaaaaagtcaatgta 31569885  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct 610  Q
    ||||||||||||||||||||||  |||  |||   ||||| |||||||||||||||||||||| ||| |||||||||||  ||||||||||    
T  31569886 acatagcaagtggaatgttaat--taacttgggatatatatgtgatgttcttgtttgagaaattttgaagaaatagaagacaagagcccct 31569974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 395 - 565
Target Start/End: Original strand, 21683646 - 21683811
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    |||||||||||||||||| || | | |||||||   ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  21683646 ctttgataacacatccaaatcttgc-aaaggac---gacatttcacaaagagtgaaagaatatttacacattagtcatatcacttattcatactttggga 21683741  T
Q  495 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgat 565  Q
    ||||||| | || ||| |||||||||| ||||||| ||||||||||||  ||||| ||||||||||||||||    
T  21683742 tatttttgattgaaaaagtcaatgtaatatagcaaatggaatgttaat--taaaccggagcatataagtgat 21683811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 431 - 565
Target Start/End: Complemental strand, 20881549 - 20881416
Alignment:
Q  431 gacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgtaacatagcaag 529  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||| |||||||||| |||||||     
T  20881549 gacatttcacaaagagtgaaagaatatttacacattagtcatatcacttattcatactttgggatatttttgattgaaaaagtcaatgtaatatagcaaa 20881450  T
Q  530 tggaatgttaattataaactggagcatataagtgat 565  Q
    ||||||||||||  ||||| ||||||||||||||||    
T  20881449 tggaatgttaat--taaaccggagcatataagtgat 20881416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 421 - 605
Target Start/End: Original strand, 18715777 - 18715958
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| |||||||||| | || ||| ||||||||     
T  18715777 aaaggaagaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttacgatatttttgattgaaaaagtcaatgtg 18715875  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagag 605  Q
    ||||||||||||||||||||||  |||||||| |||||||| || || | |||||| | |||| | ||| |||||||||| |||||    
T  18715876 acatagcaagtggaatgttaat--taaactggggcatataattgttg-tgttgtttcataaatgtcggataaatagaaggcaagag 18715958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 514 - 674
Target Start/End: Complemental strand, 18785428 - 18785269
Alignment:
Q  514 aatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctg-c 612  Q
    ||||||||||||||||||||||||||||||  |||||  |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | |    
T  18785428 aatgtaacatagcaagtggaatgttaatta--aactgaggcatataagtgatgttcttgtttgagaaattttggagaaatagaaggcaagagccccggcc 18785331  T
Q  613 tacagccaccccttcccnnnnnnncattcacctatcgacatttcctatcctaggattcaaat 674  Q
     ||| |||||||||| |       ||||||| |||  |  ||||||||||||||||||||||    
T  18785330 aacaaccaccccttctctttttttcattcacgtatatagctttcctatcctaggattcaaat 18785269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 421 - 543
Target Start/End: Complemental strand, 23160363 - 23160240
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||||||  |||| ||||  || ||||| ||||||||| | || ||| |||||||||    
T  23160363 aaaggacgaagacatttcaaaaagagtgaaacaatgtttacctattagtcgcatcatttataaatgctttgtgatatttttgattgaaaaagtcaatgta 23160264  T
Q  520 acatagcaagtggaatgttaatta 543  Q
    ||||||||||||||||||||||||    
T  23160263 acatagcaagtggaatgttaatta 23160240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 113 - 334
Target Start/End: Complemental strand, 23160668 - 23160441
Alignment:
Q  113 ataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggag 200  Q
    |||||||||||||||||||||||| ||||| |||||| ||||| |||            |||||||||||||||||||||||||||||||||    ||||    
T  23160668 ataaaaaatgtaagatatgtaatttatgcacttctttgacatgaagttacttaatatatacttagttttgtgatgcatactcatctatctat----ggag 23160573  T
Q  201 gatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttacaaaa-ccagtacac 299  Q
    ||||||||| ||| ||| ||| |||| |||      ||||||||||| |||||| |||||| |||||||||  ||| | ||||||||||| |||||||||    
T  23160572 gatgaatatacatgaaacatgagtgacattaat---ggtgggtttgatgaagactttaaatctttcccatcgttaaaacaatttacaaaaaccagtacac 23160476  T
Q  300 atatgctttatattatttctccagccattttagtc 334  Q
    ||||||| ||||||||||||| | |||||| ||||    
T  23160475 atatgctctatattatttctcgatccatttgagtc 23160441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 115 - 329
Target Start/End: Complemental strand, 18767625 - 18767404
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt--------------acttagttttgtgatgcatactcatctatctatctatggag 200  Q
    |||||||||||||||||||||||||||| || |||||||||||||              ||||||||||||||||||||||||||||||||     ||      
T  18767625 aaaaaatgtaagatatgtaattcatgcacttttttaacatggagttacttaatatatatacttagttttgtgatgcatactcatctatctag----ggta 18767530  T
Q  201 gatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttacaaaaccagtacaca 300  Q
    ||||||||||||| ||| ||| || | ||||   ||||||||||||| |||||||||||||||||| ||||| ||||| ||||||| | |||||||| ||    
T  18767529 gatgaatatgcatgaaacatgagtcacatttac-ggggtgggtttgatgaagacattaaatttttctcatctctaacacaatttac-ataccagtacgca 18767432  T
Q  301 tatgctttatattatttctccagccattt 329  Q
    ||||| | |||||||||||| ||||||||    
T  18767431 tatgc-tcatattatttctcgagccattt 18767404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 110 - 334
Target Start/End: Original strand, 31569475 - 31569708
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatg 197  Q
    ||||||||||||||||||||||||||| ||||| |||| | |||||||||            ||||||||||||||||||||||||| |||||||    |    
T  31569475 ttgataaaaaatgtaagatatgtaatttatgcacttctctgacatggagttacttaatatatacttagttttgtgatgcatactcatttatctat----g 31569570  T
Q  198 gaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttaca-aaaccagta 296  Q
     | ||||||||| |||  || ||| |||| ||||   ||||||||||||| |||||| |||||| ||||| |||  ||| | |||||||| ||| |||||    
T  31569571 aaagatgaatatacatggaacatgagtgacatttatgggggtgggtttgatgaagactttaaatatttcctatccttaaaacaatttacagaaatcagta 31569670  T
Q  297 cacatatgctttatattatttctccagccattttagtc 334  Q
    |||||||||| ||||||||||||| |||||||| ||||    
T  31569671 cacatatgctctatattatttctcgagccatttgagtc 31569708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 110 - 329
Target Start/End: Original strand, 18715456 - 18715685
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatg 197  Q
    |||||||||||||||||||| |||||||||||| |||||||||| | |||            |||||||||||||||||||||||    |||||||||||    
T  18715456 ttgataaaaaatgtaagataggtaattcatgcacttctttaacacgaagttacttaacatatacttagttttgtgatgcatactc----atctatctatg 18715551  T
Q  198 gaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataattt--acaaaaccagt 295  Q
    |||||||||||||||| ||| ||| |||||  ||    |||| ||||||| ||||| ||||||| ||| |||||  ||||| | |||  | |||| ||||    
T  18715552 gaggatgaatatgcatgaaacatgagtgatggttatgagggttggtttgatgaagatattaaatcttttccatcgctaacacattttagagaaaaacagt 18715651  T
Q  296 acacatatgctttatattatttctccagccattt 329  Q
    | ||||||||| |||||||||| || ||||||||    
T  18715652 aaacatatgctctatattatttatcaagccattt 18715685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 115 - 312
Target Start/End: Complemental strand, 20025641 - 20025435
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt--------------acttagttttgtgatgcatactcatctatctatctatggag 200  Q
    |||||||||||||||||||||||||||| |||| |||||||||||              |||||||||||||||||||||||||||||||||    | ||    
T  20025641 aaaaaatgtaagatatgtaattcatgcacttctctaacatggagttacttaatatatatacttagttttgtgatgcatactcatctatctat----gaag 20025546  T
Q  201 gatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttacaaaaccagtacaca 300  Q
    ||||||||| |||  || ||| |||| ||||   || |||||||||| ||||||||||||| ||||  |||| ||||| ||||||| | |||||||| ||    
T  20025545 gatgaatatacatggaacatgagtgacatttatgggtgtgggtttgatgaagacattaaatctttcttatctctaacacaatttac-ataccagtacgca 20025447  T
Q  301 tatgctttatat 312  Q
    |||||| |||||    
T  20025446 tatgctctatat 20025435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 110 - 329
Target Start/End: Complemental strand, 15906974 - 15906745
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatg 197  Q
    |||||||||||||||||||| |||||||||||| |||||||||| |||||            |||||||||||||||||||||||||||||    |||||    
T  15906974 ttgataaaaaatgtaagataagtaattcatgcacttctttaacacggagttacttaatatatacttagttttgtgatgcatactcatctat----ctatg 15906879  T
Q  198 gaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttac--aaaaccagt 295  Q
    ||||||||||||||||  || ||| |||  | ||    |||| ||||||| ||||| ||||||| ||| |||||  ||||| | |||||  |||| || |    
T  15906878 gaggatgaatatgcatgcaacatgagtggcagttatgagggttggtttgatgaagatattaaatcttttccatcgctaacacattttacagaaaaacaat 15906779  T
Q  296 acacatatgctttatattatttctccagccattt 329  Q
    | ||||||||| |||||||||| || ||||||||    
T  15906778 aaacatatgctctatattatttatcaagccattt 15906745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 18801337 - 18801288
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt 159  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  18801337 ttgataaaaaatgaaagatgtgtaattcatgcatttctttaacatggagt 18801288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 159 - 334
Target Start/End: Original strand, 21683413 - 21683582
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacatta 258  Q
    ||||||||||||||||||| |||||||||||||| ||    ||||  |||||||| ||| ||| |||| | ||   ||| ||||||||| ||||||||||    
T  21683413 tacttagttttgtgatgcaaactcatctatctatgta----ggat--atatgcatgaaacatgagtgacaattatggggatgggtttgatgaagacatta 21683506  T
Q  259 aatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccattttagtc 334  Q
    ||| |||| ||||  ||||| |||||||| ||| ||||||| |||| || ||||||| ||||| |||||||| ||||    
T  21683507 aatctttctcatcgctaacacaatttacagaaagcagtacatatatactctatatta-ttctcgagccatttaagtc 21683582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 334
Target Start/End: Original strand, 14463669 - 14463908
Alignment:
Q  105 caaatttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctat 192  Q
    |||| ||||| |||||||||||||| ||||||||| || |||||||||| |||||            |||||||||||||| ||||||||    ||||||    
T  14463669 caaacttgatcaaaaatgtaagataggtaattcattcacttctttaacacggagttacttaatatatacttagttttgtgaagcatactc----atctat 14463764  T
Q  193 ctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttac--aaaa 290  Q
    ||||||||||||||||||||| ||| ||| |||  | ||    |||| ||||||| ||||| ||||||| ||| |||||  | ||| | |||||  ||||    
T  14463765 ctatggaggatgaatatgcatgaaacatgagtggcagttataagggttggtttgatgaagatattaaatcttttccatcgctgacacattttacagaaaa 14463864  T
Q  291 ccagtacacatatgctttatattatttctccagccattttagtc 334  Q
     || || ||||||||| |||||||||| || |||||||| ||||    
T  14463865 acaataaacatatgctctatattatttatcaagccatttgagtc 14463908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 20881814 - 20881645
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacatta 258  Q
    ||||||||||||||||||| ||||||||||    ||||| |||||  |||||||| ||| ||| |||| | ||   ||| ||||||||| ||||| ||||    
T  20881814 tacttagttttgtgatgcaaactcatctat----ctatgtaggat--atatgcatgaaacatgagtgacaattatggggatgggtttgatgaagatatta 20881721  T
Q  259 aatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccattttagtc 334  Q
    ||| ||||||| |  ||||| |||||||| ||| ||||||| |||| || ||||||| ||||| |||||||| ||||    
T  20881720 aatctttcccaacgctaacacaatttacagaaagcagtacatatatactctatatta-ttctcgagccatttaagtc 20881645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 328
Target Start/End: Complemental strand, 14602765 - 14602679
Alignment:
Q  243 tttgaggaagacattaaatttttcccatctataacataatttacaaa-accagtacacatatgctttatattatttctccagccatt 328  Q
    ||||| ||||| ||||||| |||| ||||  ||||| |||||||| | | || |||||||||||| ||||||||||||| |||||||    
T  14602765 tttgatgaagatattaaatatttcacatcactaacacaatttacagatatcaatacacatatgctctatattatttctcaagccatt 14602679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 21393158 - 21393111
Alignment:
Q  162 ttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcat 213  Q
    |||||||||||||||||||||||    |||| ||||||||||||||||||||    
T  21393158 ttagttttgtgatgcatactcat----ctatatatggaggatgaatatgcat 21393111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 21393206 - 21393173
Alignment:
Q  126 gatatgtaattcatgcatttctttaacatggagt 159  Q
    |||||||||||||||||||| |||||||||||||    
T  21393206 gatatgtaattcatgcatttatttaacatggagt 21393173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 8e-60; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 421 - 612
Target Start/End: Complemental strand, 7964504 - 7964315
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| |||||||| | || ||| |||||||||    
T  7964504 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgcaatatttttgattgaaaaagtcaatgta 7964406  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 612  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  7964405 acatagcaagtggaatgttaat--taaactggggcatataattgatgttgttgtttgagaaatgttggagaaatagaaggcaagagcgcctgc 7964315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 421 - 612
Target Start/End: Original strand, 8224233 - 8224422
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||  |||||||||||||||||||| | || ||| ||||||||     
T  8224233 aaaggacgaagacatttcaaaaggagtgaaagcatatttacacattagtcatatcactt-ctcatactttgcgatatttttgattgaaaaagtcaatgtg 8224331  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 612  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||||||| |||||||| |||| |||||||||||||||| |||||| |||||    
T  8224332 acatagcaagtggaatgttaat--taaactggggcatataattgatgttgttgtttgataaatgttggagaaatagaaggcaagagcgcctgc 8224422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 395 - 608
Target Start/End: Complemental strand, 43974297 - 43974084
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    ||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  43974297 ctttgataacacatccaagtcttgcaaa-ggacaaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcacttattcatactttgtga 43974199  T
Q  495 tatttttcactgaaat-gtcaatgtaacata----gcaagtggaatgttaattataaactggag-catataagtgatgttcttgtttgagaaatcttgga 588  Q
    ||||||  | |||||  ||||||||||||||    ||||||| |||||||||||  |||||||| |||||||||| ||||||||||||| |||  |||||    
T  43974198 tattttg-attgaaaaagtcaatgtaacatatatagcaagtgaaatgttaatta--aactggaggcatataagtggtgttcttgtttgacaaa--ttgga 43974104  T
Q  589 gaaatagaagggaagagccc 608  Q
    ||||||  ||| ||||||||    
T  43974103 gaaataataggcaagagccc 43974084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 395 - 589
Target Start/End: Original strand, 22932518 - 22932710
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    |||| |||||||||||||||  | |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||    
T  22932518 ctttaataacacatccaagttttgcaaa-ggacgaagacatttcaaaaagagtgaaagaatatttacgcattagtcatatcacttattcatactttgaga 22932616  T
Q  495 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggag 589  Q
    ||||||| | || ||| ||  ||||| ||||||||||||||||||||    || | || |||||||||||||||| ||||||||||||| ||||||    
T  22932617 tatttttgattgaaaaagttgatgtagcatagcaagtggaatgttaa--ccaatccggggcatataagtgatgttattgtttgagaaattttggag 22932710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 115 - 334
Target Start/End: Original strand, 22932232 - 22932459
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggagga 202  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||            ||||||||| |||||||||||||||||||||||     |||||    
T  22932232 aaaaaaagtaagatacgtaattcatgcacttctttaacatggagttatttaatacatacttagttt-gtgatgcatactcatctatctatt----gagga 22932326  T
Q  203 tgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttaca-aaaccagtacacat 301  Q
    ||||||||||| ||| ||| | || | ||   ||||||||||||| ||||||||||||| ||||||| |  |||||  ||||||| ||||||||||| ||    
T  22932327 tgaatatgcatgaaacatgagagacagttatgggggtgggtttgatgaagacattaaatatttcccagcgctaacacgatttacagaaaccagtacagat 22932426  T
Q  302 atgctttatattatttctccagccattttagtc 334  Q
    || || ||||||||||||| |||||||| ||||    
T  22932427 attctctatattatttctcaagccatttgagtc 22932459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 329
Target Start/End: Complemental strand, 7964822 - 7964598
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggag------------tacttagttttgtgatgcatactcatctatctatctatggagga 202  Q
    ||||||||||||||| |||||||||||| |||||||||| ||||            ||||||| ||||||||||||||||    || |||||||||||||    
T  7964822 aaaaaatgtaagataggtaattcatgcacttctttaacacggagttacttaatatatacttagctttgtgatgcatactc----atttatctatggagga 7964727  T
Q  203 tgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatt--tacaaaaccagtacaca 300  Q
    ||||||||||| ||| ||| |||  | ||    |||| ||||||| ||||| ||||||| ||| |||||  ||||| | ||  || |||| ||||| |||    
T  7964726 tgaatatgcatgaaacatgagtggcagttatgagggttggtttgatgaagatattaaatcttttccatcgctaacacattttatagaaaaacagtaaaca 7964627  T
Q  301 tatgctttatattatttctccagccattt 329  Q
    |||||| |||||||||| || ||||||||    
T  7964626 tatgctctatattatttatcaagccattt 7964598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 442 - 543
Target Start/End: Complemental strand, 16046777 - 16046675
Alignment:
Q  442 aagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaa 540  Q
    |||||||||| |||||||||  |||||||  |||| ||||  |||||||| ||||||||| | |||||  |||||||||| ||||| |||||||||||||    
T  16046777 aagagtgaaacaatgtttacctattagtcgcatcatttataaatactttgtgatatttttgattgaaaaagtcaatgtaatatagctagtggaatgttaa 16046678  T
Q  541 tta 543  Q
    |||    
T  16046677 tta 16046675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 329
Target Start/End: Original strand, 8223913 - 8224141
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggag------------tacttagttttgtgatgcatactcatctatctatctatg 197  Q
    |||||||||||||||||||| |||||||||||| || ||||||| ||||            || |||||||||||||||||| ||    |||||||||||    
T  8223913 ttgataaaaaatgtaagataggtaattcatgcactt-tttaacacggagttacttaatatatatttagttttgtgatgcataatc----atctatctatg 8224007  T
Q  198 gaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttac--aaaaccagt 295  Q
    |||||||||||| ||| ||| ||| |||  | ||    |||| ||||||| ||||| ||||||| ||| |||||  ||||| | |||||  |||| ||||    
T  8224008 gaggatgaatatacatgaaacatgagtggcagttatgagggttggtttgatgaagatattaaatcttttccatcgctaacacattttacagaaaaacagt 8224107  T
Q  296 acacatatgctttatattatttctccagccattt 329  Q
    | ||||||||| |||||||||| || ||||||||    
T  8224108 aaacatatgctctatattatttatcaagccattt 8224141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 13586185 - 13586141
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt 159  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||    
T  13586185 aaaaaatataagatatgtaattcatgcacttctttaacatggagt 13586141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 43974564 - 43974520
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt 159  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||    
T  43974564 aaaaaatgtaagatatgcaatccatgcacttctttaacatggagt 43974520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 334
Target Start/End: Complemental strand, 43974440 - 43974354
Alignment:
Q  249 gaagacattaaatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccattttagtc 334  Q
    ||||||||||||| | ||| | |  ||||| |||||||| |||||| |||||||||||  ||||||||||||| |||||||| ||||    
T  43974440 gaagacattaaatctatccaagcgctaacacaatttacataaaccaatacacatatgcactatattatttctcgagccatttgagtc 43974354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 43974504 - 43974457
Alignment:
Q  163 tagttttgtgatgcatactcatctatctatctatggaggatgaatatgcata 214  Q
    ||||||||||||| ||||||||||||||||    ||||||||||||||||||    
T  43974504 tagttttgtgatgtatactcatctatctat----ggaggatgaatatgcata 43974457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 44967665 - 44967728
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtga 226  Q
    ||||||||||||||||||||||||    || || ||||||||||||||||||||| ||| ||| ||||    
T  44967665 tacttagttttgtgatgcatactc----atttacctatggaggatgaatatgcatgaaacatgagtga 44967728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 8e-60; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 421 - 612
Target Start/End: Complemental strand, 42882628 - 42882439
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||| | || ||| ||||||||     
T  42882628 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgcgatatttttgattgaaaaagtcaatgtg 42882530  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 612  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||| |||||| |||||    
T  42882529 acatagcaagtggaatgttaat--taaactggagcatataattgatgttgttgtttgataaatgttggagaaatagaaggcaagagcgcctgc 42882439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 403 - 629
Target Start/End: Original strand, 38925910 - 38926134
Alignment:
Q  403 acacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacaca--ttagtcatatcacttattcatactttgcgatatttt 500  Q
    ||||||||||||| |  |||| ||| ||||||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||| |||||||||||||    
T  38925910 acacatccaagtcttg-aaaatgacaaagacatttcaaaaatagtgaaagaatatttacacacattagtcatatcacttattcataatttgcgatatttt 38926008  T
Q  501 tcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagg 599  Q
    | | |||||  ||||||||||||||| |||| ||||||||||||  |||||| |   ||||||||||||||||||| ||||||||| |||||||| || |    
T  38926009 tgattgaaaaagtcaatgtaacatagtaagttgaatgttaatta--aactgggg---ataagtgatgttcttgttttagaaatctttgagaaataaaacg 38926103  T
Q  600 gaagagcccctgc-tacagccaccccttccc 629  Q
     |||||||||||| |||| ||||| ||||||    
T  38926104 caagagcccctgcatacaaccaccacttccc 38926134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 431 - 565
Target Start/End: Complemental strand, 22545367 - 22545234
Alignment:
Q  431 gacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgtaacatagcaag 529  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||| ||| |||||| |||||||     
T  22545367 gacatttcacaaagagtgaaataatatttacacattagtcatatcacttattcatactttgggatatttttgattgaaaaagtcgatgtaatatagcaaa 22545268  T
Q  530 tggaatgttaattataaactggagcatataagtgat 565  Q
    ||||||||||||  ||||| ||||||||||||||||    
T  22545267 tggaatgttaat--taaaccggagcatataagtgat 22545234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 461 - 599
Target Start/End: Complemental strand, 32726383 - 32726246
Alignment:
Q  461 cacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatata 559  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||||  |||||| |||||| | | |||||||  ||||||  |||||| |||||||    
T  32726383 cacattagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaataataatta--aactggggcatata 32726286  T
Q  560 agtgatgttcttgtttgagaaatcttggagaaatagaagg 599  Q
    ||||||||||||||||||||||| ||||| ||||| ||||    
T  32726285 agtgatgttcttgtttgagaaattttggaaaaatataagg 32726246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 32726725 - 32726599
Alignment:
Q  194 tatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttaca-aaacc 292  Q
    |||||| ||||||||||||| ||| ||| |||| ||||  |||||||| ||||| |||| |||||||| |||| ||||  ||||| |||||| | |||||    
T  32726725 tatggatgatgaatatgcatgaaacatgagtgacattta-tggggtggttttgatgaagccattaaatctttctcatcgctaacacaatttaaagaaacc 32726627  T
Q  293 agtacacatatgctttatattatttctc 320  Q
    |||||||||||||| |||||||||||||    
T  32726626 agtacacatatgctctatattatttctc 32726599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 22545631 - 22545462
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacatta 258  Q
    ||||||||||||||||||| |||||||||||||| ||    ||||  |||||||| ||| ||| |||| | ||   ||| | ||||||| ||||||||||    
T  22545631 tacttagttttgtgatgcaaactcatctatctatgta----ggat--atatgcatgaaacatgagtgacaattatggggataggtttgatgaagacatta 22545538  T
Q  259 aatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccattttagtc 334  Q
    ||| ||||||| |  ||||| |||||||| ||| ||||||| |||| || ||||||| |||||||||||||| ||||    
T  22545537 aatctttcccaacgctaacacaatttacagaaagcagtacatatatactctatatta-ttctccagccatttaagtc 22545462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 317
Target Start/End: Complemental strand, 42882948 - 42882732
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggag------------tacttagttttgtgatgcatactcatctatctatctatg 197  Q
    |||||||||||||||||||| |||||||||||| || ||||||| ||||            ||||||||||||||||||||| ||    |||||||||||    
T  42882948 ttgataaaaaatgtaagataggtaattcatgcactt-tttaacacggagttacttaatatatacttagttttgtgatgcataatc----atctatctatg 42882854  T
Q  198 gaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttac--aaaaccagt 295  Q
    |||||||||||||||| ||| ||| |||  | ||    |||| ||||||| ||||| ||||||| ||| |||||  ||||| | |||||  |||| ||||    
T  42882853 gaggatgaatatgcatgaaacatgagtggcagttatgagggttggtttgatgaagatattaaatcttttccatcgctaacacattttacagaaaaacagt 42882754  T
Q  296 acacatatgctttatattattt 317  Q
    | ||||||||| ||||||||||    
T  42882753 aaacatatgctctatattattt 42882732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 329
Target Start/End: Original strand, 38925684 - 38925849
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacatta 258  Q
    ||||| |||||||||||||| |||||||    ||||||||||||||||||||||||||| ||| | || ||||   |||||||| |||| ||||||| ||    
T  38925684 tactttgttttgtgatgcatcctcatct----atctatggaggatgaatatgcataaaacatgagagacatttatgggggtgggattgatgaagaca-ta 38925778  T
Q  259 aatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccattt 329  Q
    ||   ||| ||    ||||| |||||||| ||||||||||||||||| | ||||||||||||| || |||||    
T  38925779 aaccattctca-ggctaacacaatttacagaaaccagtacacatatgttgtatattatttctcgagtcattt 38925849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 35329369 - 35329490
Alignment:
Q  113 ataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggag 200  Q
    ||||||||||||||||||||| |||||||| |||| | |||||||||            |||||||||||||||||||||||    || || ||||||||    
T  35329369 ataaaaaatgtaagatatgtatttcatgcacttctatgacatggagttacttaatatatacttagttttgtgatgcatactc----atttacctatggag 35329464  T
Q  201 gatgaatatgcataaaaaatgtgtga 226  Q
    ||||||||||||||||| ||| ||||    
T  35329465 gatgaatatgcataaaacatgagtga 35329490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 38925628 - 38925668
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatg 155  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  38925628 aaaatatgtaagatatgtaattcatgcacttctttaacatg 38925668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 35328972 - 35329018
Alignment:
Q  113 ataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt 159  Q
    ||||||||||||||||||||| |||||||| |||| | |||||||||    
T  35328972 ataaaaaatgtaagatatgtatttcatgcacttctatgacatggagt 35329018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 8e-57; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 395 - 608
Target Start/End: Complemental strand, 43593211 - 43592995
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    |||||||||||||||||| || | |||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||    
T  43593211 ctttgataacacatccaaatcttgcaaa-ggacgaagacatttcaaaaagagtgaaataatatttatacattagtcatatcagttattcatactttgcga 43593113  T
Q  495 -----tatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttgga 588  Q
         | |||||   |||||  |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||    
T  43593112 gtttttttttttgtttgaaaaagtcaatgtaacatagcaagtggaatgttaatta--aactggagcatataagtgatgttcttatttgagaaatcttgga 43593015  T
Q  589 gaaatagaagggaagagccc 608  Q
    |||||| || ||||||||||    
T  43593014 gaaataaaatggaagagccc 43592995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 421 - 606
Target Start/End: Complemental strand, 19111668 - 19111485
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||| | || ||| ||||||||     
T  19111668 aaaggaagaaaacatttcaaaaagagtgaaagaatatttacacattaatcatatcactt-ctcatactttgcgatatttttgattgaaaaagtcaatgtg 19111570  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagc 606  Q
    ||||||||||||||||||||||  |||| ||| |||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||    
T  19111569 acatagcaagtggaatgttaat--taaattggggcatataattgatgttgttgtttgagaaatgttggagaaatagaaggcaagagc 19111485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 421 - 479
Target Start/End: Original strand, 52374763 - 52374821
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcactt 479  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52374763 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt 52374821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 115 - 329
Target Start/End: Complemental strand, 43593496 - 43593278
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggagga 202  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||            |||||||||||||||||||| ||    ||| ||||||||||||    
T  43593496 aaaaaatataagatatgtaattcatgcacttctttaacatggagttacttaatatatacttagttttgtgatgcatagtc----atcgatctatggagga 43593401  T
Q  203 tgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttacaaaaccagtacacata 302  Q
    ||||||||||| ||| ||| |||| |  || | |||||||||||| ||||||| |||||  ||||||||  ||||| |||||||  ||  ||||||||||    
T  43593400 tgaatatgcatgaaacatgagtgaca-attatagggtgggtttgatgaagaca-taaatcattcccatcattaacacaatttacctaa--agtacacata 43593305  T
Q  303 tgctttatattatttctccagccattt 329  Q
    |||  ||||||||||||| ||||||||    
T  43593304 tgccctatattatttctcgagccattt 43593278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 421 - 529
Target Start/End: Original strand, 50377784 - 50377893
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||| | ||||||||||| ||||| ||| | || ||| |||||| ||    
T  50377784 aaaggacgaagacattttaaaaatagtgaaaaaatgtttacacattaggcatatcaccttttcatactttgtgatatatttgattgaaaaagtcaattta 50377883  T
Q  520 acatagcaag 529  Q
    ||||||||||    
T  50377884 acatagcaag 50377893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 110 - 329
Target Start/End: Original strand, 52374439 - 52374668
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatg 197  Q
    |||||||||||||||||||| |||||||||||| |||||||||| |||||            |||||||||||||||||||||||    |||||||||||    
T  52374439 ttgataaaaaatgtaagataggtaattcatgcacttctttaacacggagttacttaatatatacttagttttgtgatgcatactc----atctatctatg 52374534  T
Q  198 gaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatt--tacaaaaccagt 295  Q
    ||||| |||||||||| ||| ||| |||| | ||    |||| ||||||| ||||| ||||||| ||| |||||  ||||| | ||  || |||| ||||    
T  52374535 gaggacgaatatgcatgaaacatgagtgacagttatgagggttggtttgatgaagatattaaatcttttccatcgctaacacattttatagaaaaacagt 52374634  T
Q  296 acacatatgctttatattatttctccagccattt 329  Q
    | ||||||||| |||||||||| || ||||||||    
T  52374635 aaacatatgctctatattatttatcaagccattt 52374668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 159 - 329
Target Start/End: Complemental strand, 19111928 - 19111760
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacatta 258  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||| ||| ||| |||| | ||    |||| | ||||| ||||| ||||    
T  19111928 tacttagttttgtgatgcatactcatctat----ctatggaggatgaatatgcatgaaacatgagtgacagttatgagggttgatttgatgaagatatta 19111833  T
Q  259 aatttttcccatctataacataatttac--aaaaccagtacacatatgctttatattatttctccagccattt 329  Q
    ||| |||  ||||  ||||| | |||||  |||| ||||| ||||||||  |||||||||| || ||||||||    
T  19111832 aatctttttcatcgctaacacattttacagaaaaacagtaaacatatgcactatattatttatcaagccattt 19111760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 43593698 - 43593654
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt 159  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  43593698 aaaaaatgtaagatatgtaattcatgcacttctttaacatggagt 43593654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 50377613 - 50377706
Alignment:
Q  242 gtttgaggaagacattaaatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccattttagtc 334  Q
    |||||| ||||||||||||| |||||||||  ||| | |||||| | ||| || ||||||| |||| ||||||||||||| |||||||| ||||    
T  50377613 gtttgatgaagacattaaatctttcccatcgttaaaacaatttatagaaatcattacacatgtgctctatattatttctcgagccatttgagtc 50377706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 18811136 - 18811107
Alignment:
Q  159 tacttagttttgtgatgcatactcatctat 188  Q
    ||||||||||||||||||||||||||||||    
T  18811136 tacttagttttgtgatgcatactcatctat 18811107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 19111989 - 19111948
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaa 151  Q
    ||||||||||||||| |||| |||||||||||| ||||||||    
T  19111989 ttgataaaaaatgtacgataggtaattcatgcacttctttaa 19111948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 421 - 612
Target Start/End: Original strand, 6942 - 7130
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactgaaatgtcaatgtaa 520  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||||| |||||||| | |||||  ||||||| |    
T  6942 aaaggacgaagacatttaaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgcaatatttttgattgaaaattcaatgtga 7040  T
Q  521 catagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 612  Q
    |||||||||| ||||||||||  |||||| | |||| ||| ||||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  7041 catagcaagtagaatgttaat--taaactagggcatttaattgatgttgttgtttgagaaatgttggagaaatagaaggcaagagcgcctgc 7130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 110 - 329
Target Start/End: Original strand, 6618 - 6850
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggag------------tacttagttttgtgatgcatactcatctatctatctatg 197  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||            ||||||||||||||||||||||||    |||||||||||    
T  6618 ttgataaaaaatgtaagataggtaattcatgcacttctttaacacggagttacttaatatatacttagttttgtgatgcatactc----atctatctatg 6713  T
Q  198 gaggatgaatatgcataaaa---aatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttac--aaaacc 292  Q
    |||||||||||||||| |||    ||| |||| | ||    |||| ||||||| ||||| ||||||| ||| |||||  ||||| | |||||  |||| |    
T  6714 gaggatgaatatgcatgaaacatgatgagtgacagttatgagggttggtttgatgaagatattaaatcttttccatcgctaacacattttacagaaaaac 6813  T
Q  293 agtacacatatgctttatattatttctccagccattt 329  Q
    |||| ||||||||| |||||||||| || ||||||||    
T  6814 agtaaacatatgctctatattatttatcaagccattt 6850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 395 - 612
Target Start/End: Complemental strand, 31913 - 31700
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    |||||||||||||| |||||| | |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||    
T  31913 ctttgataacacattcaagtcttgcaaa-ggacgaagacatttcaaaaagagtgaaaaaatatttacacattagtcatatcacttattcatactttgaga 31815  T
Q  495 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 593  Q
    || |||| | || ||| ||  ||||||||||||||||||||||||||    || |||| |||||||||||||||| |||||||||| || |||||| |||    
T  31814 ta-ttttgattgaaaaagttgatgtaacatagcaagtggaatgttaa--ccaatctggggcatataagtgatgttattgtttgagatattttggag-aat 31719  T
Q  594 agaagggaagagcccctgc 612  Q
    | |||| ||||||||||||    
T  31718 aaaaggcaagagcccctgc 31700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 115 - 266
Target Start/End: Complemental strand, 32147 - 31988
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggagga 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||||            |||||| ||||||||||| ||||||||||||||    ||||||    
T  32147 aaaaaatgtaagatatgtaattcatgcacttctttaacatggagttatttaatacatacttaggtttgtgatgcacactcatctatctat----ggagga 32052  T
Q  203 tgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttc 266  Q
    ||||||||||| ||| ||| | |||| ||   ||||||||||||| ||||||||||||| ||||    
T  32051 tgaatatgcatgaaacatgagagatagttatgggggtgggtttgatgaagacattaaatctttc 31988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 403 - 629
Target Start/End: Original strand, 3568983 - 3569207
Alignment:
Q  403 acacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacaca--ttagtcatatcacttattcatactttgcgatatttt 500  Q
    ||||||||||||| |  |||| ||| ||||||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||| |||||||||||||    
T  3568983 acacatccaagtcttg-aaaatgacaaagacatttcaaaaatagtgaaagaatatttacacacattagtcatatcacttattcataatttgcgatatttt 3569081  T
Q  501 tcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagg 599  Q
    | | |||||  ||||||||||||||| |||| ||||||||||||  |||||| |   ||||||||||||||||||| ||||||||| |||||||| || |    
T  3569082 tgattgaaaaagtcaatgtaacatagtaagttgaatgttaatta--aactgggg---ataagtgatgttcttgttttagaaatctttgagaaataaaacg 3569176  T
Q  600 gaagagcccctgc-tacagccaccccttccc 629  Q
     |||||||||||| |||| ||||| ||||||    
T  3569177 caagagcccctgcatacaaccaccacttccc 3569207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 420 - 610
Target Start/End: Complemental strand, 39702708 - 39702519
Alignment:
Q  420 aaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgt 518  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||||||  |||| ||||  ||||||||| |||||||| | || ||| ||||||||    
T  39702708 aaaaggacggagacatttcaaaaagagtgaaataatgtttacatattagtcgcatcatttataaatactttgcaatatttttgattgaaaaagtcaatgt 39702609  T
Q  519 aacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct 610  Q
    |||||||||||||||||||||||  |||  |||   ||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||    
T  39702608 aacatagcaagtggaatgttaat--taacttgggatatatatgtgatgttcttgtttgagaaattttggagtaatagaaggcaagagcccct 39702519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 421 - 525
Target Start/End: Original strand, 1966765 - 1966870
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 519  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| | || ||| |||||||||    
T  1966765 aaaggacgaagacattttaaaaagagtgaaagaatgtttacacattaggcatatcaccttttcatactttgcgatatatttgattgaaaaagtcaatgta 1966864  T
Q  520 acatag 525  Q
    ||||||    
T  1966865 acatag 1966870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 105 - 334
Target Start/End: Complemental strand, 39703025 - 39702787
Alignment:
Q  105 caaatttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctat 192  Q
    |||| ||||||||||||||||| ||||||||| ||||| |||||| |||||||||            |||||||||||| ||||||||||||||||||||    
T  39703025 caaacttgataaaaaatgtaagttatgtaatttatgcacttctttgacatggagttacttaatatatacttagttttgtaatgcatactcatctatctat 39702926  T
Q  193 ctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttaca-aaac 291  Q
        ||||||||||||| ||| ||| ||| |||| ||||   ||||||||||||| |||||| |||||| ||||  |||  ||| | |||||||| |||     
T  39702925 ----ggaggatgaatatacatgaaacatgagtgacatttatgggggtgggtttgatgaagactttaaatctttcatatccttaaaacaatttacagaaat 39702830  T
Q  292 cagtacacatatgctttatattatttctccagccattttagtc 334  Q
    ||||||| ||||||| ||||||||||||| |||||||| ||||    
T  39702829 cagtacaaatatgctctatattatttctcgagccatttgagtc 39702787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 329
Target Start/End: Original strand, 3568757 - 3568922
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacatta 258  Q
    ||||| |||||||||||||| |||||||    ||||||||||||||||||||||||||| ||| | || ||||   |||||||| |||| ||||||| ||    
T  3568757 tactttgttttgtgatgcatcctcatct----atctatggaggatgaatatgcataaaacatgagagacatttatgggggtgggattgatgaagaca-ta 3568851  T
Q  259 aatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccattt 329  Q
    ||   ||| ||    ||||| |||||||| ||||||||||||||||| | ||||||||||||| || |||||    
T  3568852 aaccattctca-ggctaacacaatttacagaaaccagtacacatatgttgtatattatttctcgagtcattt 3568922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 1966491 - 1966529
Alignment:
Q  109 tttgataaaaaatgtaagatatgtaattcatgcatttct 147  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  1966491 tttgataaaaaatgtaagatatgtaattcatgcacttct 1966529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 3568701 - 3568741
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatg 155  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  3568701 aaaatatgtaagatatgtaattcatgcacttctttaacatg 3568741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 1966594 - 1966687
Alignment:
Q  242 gtttgaggaagacattaaatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccattttagtc 334  Q
    |||||| ||||||||||||| |||||||||  ||| | |||||| | ||| || ||||||| |||| ||||||||||||| || ||||| ||||    
T  1966594 gtttgatgaagacattaaatctttcccatcgttaaaacaatttatagaaatcattacacatgtgctctatattatttctcaagtcatttgagtc 1966687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 188
Target Start/End: Original strand, 12315066 - 12315095
Alignment:
Q  159 tacttagttttgtgatgcatactcatctat 188  Q
    ||||||||||||||||||||||||||||||    
T  12315066 tacttagttttgtgatgcatactcatctat 12315095  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 188
Target Start/End: Original strand, 18535911 - 18535940
Alignment:
Q  159 tacttagttttgtgatgcatactcatctat 188  Q
    ||||||||||||||||||||||||||||||    
T  18535911 tacttagttttgtgatgcatactcatctat 18535940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 48520172 - 48520205
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctat 192  Q
    |||||||||||| |||||||||||||||||||||    
T  48520172 tacttagttttgcgatgcatactcatctatctat 48520205  T

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Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 421 - 610
Target Start/End: Original strand, 6506469 - 6506655
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgta 519  Q
    |||||||||||||||||||||||||||||||  || ||| || ||||||| ||||| ||||  ||||||||| |||||||| | |||||  |||||||||    
T  6506469 aaaggacgaagacatttcaaaaagagtgaaa--atatttgcatattagtcgtatcatttataaatactttgcaatattttttattgaaaaagtcaatgta 6506566  T
Q  520 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct 610  Q
    ||||||||||||||||||||||  |||  |||   ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  6506567 acatagcaagtggaatgttaat--taacttgggatatatatgtgatgttcttgtttgagaaattttggagaaatagaaggcaagagcccct 6506655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 117 - 329
Target Start/End: Original strand, 7567158 - 7567378
Alignment:
Q  117 aaaatgtaagatatgtaattcatgcatttctttaacatggagt------------acttagttttgtgatgcatactcatctatctatctatggaggatg 204  Q
    ||||| |||||||||||||||||||| |||||||||||||| |            |||||| |||| |||||||||||||||||||||    || |||||    
T  7567158 aaaatataagatatgtaattcatgcacttctttaacatggatttacttaatatatacttaggtttgggatgcatactcatctatctat----ggtggatg 7567253  T
Q  205 aatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttacaaaaccagtacacatatg 304  Q
    ||||||||| ||| ||| |||| | ||   ||||||||||||  ||||| ||||||| |||||||    |||||||||||||| || | |||||||||||    
T  7567254 aatatgcatgaaacatgagtgacaattatgggggtgggtttgctgaagatattaaatctttcccagtgctaacataatttacagaaaccgtacacatatg 7567353  T
Q  305 ctttatattatttctccagccattt 329  Q
     | ||||||||||||| ||||||||    
T  7567354 gtctatattatttctcgagccattt 7567378  T

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Target: scaffold0214 (Bit Score: 84; Significance: 2e-39; HSPs: 6)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 395 - 612
Target Start/End: Original strand, 22186 - 22405
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaa-tgtttacac----attagtcatatcacttattcatactt 489  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||||||| ||| || | |||||||    ||||||||||||||||||||||||||    
T  22186 ctttgataacacatccaagtcttgcaaa-ggacgaagacatttcaaaaagagtaaaaaaaatatttacactttaattagtcatatcacttattcatactt 22284  T
Q  490 tgcgatatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttgga 588  Q
    || ||||||||| | || ||| ||  || |||||||||||||||||||||||    || |||| |||||||||||||||| ||||||||||||| |||||    
T  22285 tgagatatttttgattgaaaaagttgatataacatagcaagtggaatgttaa--ccaatctggggcatataagtgatgttattgtttgagaaattttgga 22382  T
Q  589 gaaatagaagggaagagcccctgc 612  Q
    | |||| |||| ||||||||||||    
T  22383 g-aataaaaggcaagagcccctgc 22405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 115 - 334
Target Start/End: Original strand, 21899 - 22127
Alignment:
Q  115 aaaaaatgtaagatatgtaattcatgcatttctttaacatggag------------tacttagttttgtgatgcatactcatctatctatctatggagga 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||            ||||||| ||||||||||||||||    ||||||||||| ||||    
T  21899 aaaaaatgtaagatatgtaattcatgcacttctttaacatggagttatttaatacatacttaggtttgtgatgcatactc----atctatctatgaagga 21994  T
Q  203 tgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaatttttcccatctataacataatttaca-aaaccagtacacat 301  Q
    ||||||||||| ||| | | | |||| ||   ||| | ||||||| ||||||||||||| ||| ||| |  |||||  ||||||| ||||||||||| ||    
T  21995 tgaatatgcatgaaacaagagagatagttatggggctaggtttgatgaagacattaaatcttttccagcgctaacacgatttacagaaaccagtacatat 22094  T
Q  302 atgctttatattatttctccagccattttagtc 334  Q
    ||||| || |||||||||| |||||||| ||||    
T  22095 atgctatagattatttctcaagccatttgagtc 22127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 453 - 610
Target Start/End: Complemental strand, 1733 - 1577
Alignment:
Q  453 aatgtttacacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactgg 551  Q
    |||||||||| |||| ||  |||| ||||  ||||||||| |||||||| | | |||  |||||||||||||||||||||||||||||||||  |  |||    
T  1733 aatgtttacatattattcgcatcatttataaatactttgcaatatttttgattaaaaaagtcaatgtaacatagcaagtggaatgttaatta--acttgg 1636  T
Q  552 agcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct 610  Q
       ||||| ||||||||||||||||| |||| |||||| ||||||||| ||||||||||    
T  1635 gatatatatgtgatgttcttgtttgaaaaattttggagtaatagaaggcaagagcccct 1577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 159 - 329
Target Start/End: Complemental strand, 29066 - 28899
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacatta 258  Q
    ||||||||||||||||||||||||||||| ||||    ||||||||||||   || ||| ||| |||| ||||   ||||||| ||||| |||||| |||    
T  29066 tacttagttttgtgatgcatactcatctacctat----ggaggatgaataaaaatgaaacatgagtgacatttatgggggtggatttgatgaagacttta 28971  T
Q  259 aatttttcccatctataacataatttacaaa-accagtacacatatgctttatattatttctccagccattt 329  Q
    ||| ||||  |||  ||| | |||||||| | | ||||||||||||||| ||||||||||||| ||||||||    
T  28970 aatctttcatatccttaagacaatttacagacatcagtacacatatgctctatattatttctcgagccattt 28899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 28816 - 28775
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttaca 462  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  28816 aaaggacggagacatttcaaaaagagtgaaacaatgtttaca 28775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 16728 - 16687
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttaca 462  Q
    |||||||| || ||||||||||||||||||| ||||||||||    
T  16728 aaaggacggaggcatttcaaaaagagtgaaacaatgtttaca 16687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 420 - 607
Target Start/End: Original strand, 50165 - 50351
Alignment:
Q  420 aaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacatta----gtcatatcacttattcatactttgcgatatttttcactg-aaatgtca 514  Q
    |||| ||| ||||||||||||||| ||||||||||| |||||||||||    ||||||||||||||||||| |||||||||||||| | || ||| ||||    
T  50165 aaaatgacaaagacatttcaaaaatagtgaaagaatatttacacattaattagtcatatcacttattcataatttgcgatattttt-attgaaaaagtca 50263  T
Q  515 atgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcc 607  Q
    |||||||||||||||| ||||||||||  |||||||| |   ||||||||| ||||||||| ||||||||| |||||||| |||| |||||||    
T  50264 atgtaacatagcaagttgaatgttaat--taaactgggg---ataagtgatattcttgttttagaaatctttgagaaataaaaggcaagagcc 50351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 159 - 329
Target Start/End: Original strand, 49922 - 50088
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacatta 258  Q
    ||||| |||||||||||||| ||||| |||||||    ||||||||||||||| | ||| ||| | || ||||  ||||||| | |||| ||||||||||    
T  49922 tactttgttttgtgatgcatcctcatatatctat----ggaggatgaatatgcgtgaaacatgagagacattta-tggggtgagattgatgaagacatta 50016  T
Q  259 aatttttcccatctataacataatttaca-aaaccagtacacatatgctttatattatttctccagccattt 329  Q
    |||  ||| || |  ||||| |||||||| ||||||||||||||||| | ||||||||||||| ||||||||    
T  50017 aatcattctcaacgctaacacaatttacagaaaccagtacacatatgttgtatattatttctcgagccattt 50088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 395 - 503
Target Start/End: Original strand, 9481 - 9588
Alignment:
Q  395 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 494  Q
    ||||||||||||||| ||||| | |||| |||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |    
T  9481 ctttgataacacatctaagtcttgcaaa-ggacgaaggcatttcaaaaagagtgaaagaatgttaagacattagtcatgtcacttattcatactttgcaa 9579  T
Q  495 tatttttca 503  Q
    |||| ||||    
T  9580 tattcttca 9588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 9264 - 9376
Alignment:
Q  162 ttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtgatattttgtggggtgggtttgaggaagacattaaat 261  Q
    |||||||||||||||||||||    |||||| |||||||||||||||||||| ||| ||   ||| ||||   ||| ||| ||||| |||||||||||||    
T  9264 ttagttttgtgatgcatactc----atctatatatggaggatgaatatgcatgaaacatcactgacatttatggggatggatttgatgaagacattaaat 9359  T
Q  262 ttttcccatctataaca 278  Q
     ||  |||||| |||||    
T  9360 cttaaccatctctaaca 9376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 421 - 543
Target Start/End: Complemental strand, 5294 - 5175
Alignment:
Q  421 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatt-tttcactgaaatgtcaatgta 519  Q
    |||||||||| ||||||||| |||||||||||| | |||||||||||||||||| ||||  ||||||||| |||||||  || |   ||| ||||||||     
T  5294 aaaggacgaatacatttcaacaagagtgaaagactatttacacattagtcatataactt-ctcatacttttcgatattaattga---aaaagtcaatgtg 5199  T
Q  520 acatagcaagtggaatgttaatta 543  Q
    ||||||||||||||||||||||||    
T  5198 acatagcaagtggaatgttaatta 5175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 5557 - 5508
Alignment:
Q  110 ttgataaaaaatgtaagatatgtaattcatgcatttctttaacatggagt 159  Q
    |||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  5557 ttgataaaaaatgtaagataggtaattcatgcacttctttaacacggagt 5508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 113 - 70
Alignment:
Q  116 aaaaatgtaagatatgtaattcatgcatttctttaacatggagt 159  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  113 aaaaatgtaagatatgttattcatgcacttctttaacatggagt 70  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 13799 - 13862
Alignment:
Q  159 tacttagttttgtgatgcatactcatctatctatctatggaggatgaatatgcataaaaaatgtgtga 226  Q
    ||||||||||||||||||||||||    || || ||||||||||||||||||||| ||| ||| ||||    
T  13799 tacttagttttgtgatgcatactc----atttacctatggaggatgaatatgcatgaaacatgagtga 13862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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