View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_20 (Length: 404)
Name: NF1063_low_20
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 83 - 312
Target Start/End: Original strand, 55246799 - 55247019
Alignment:
| Q |
83 |
acaatatatatttcatgtcagaaattttagtctcctttgttaaatcaatgtatgtgtatctttcaaaaataattaatatttttcagacatgtttataatg |
182 |
Q |
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| T |
55246799 |
acaatatatatttcatgtgagaaattttagtttcctttgttaaatcaatgtatgtgtatctttaaaaaaaaatt---------cagacatgtttataatg |
55246889 |
T |
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| Q |
183 |
ttttagtcttgatacaacgcaataatgatgattctttcaattaaaggaaggacattgagaagatgttaatgtttcggttagttgtcattttggtccttaa |
282 |
Q |
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| T |
55246890 |
ttttagtcttgatacaacgcaataatgatgattctttcaattgaaggaaggacattgagaagatgttaatgtttcggttagttgtcattttggtccttaa |
55246989 |
T |
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| Q |
283 |
caatgtggtatcataatggagttaagaaac |
312 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
55246990 |
caatgtggtatcataatggagttaagaaac |
55247019 |
T |
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