View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_21 (Length: 403)
Name: NF1063_low_21
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 96 - 388
Target Start/End: Original strand, 49547203 - 49547495
Alignment:
| Q |
96 |
aactctcagagtcttagttgctgttttttcaatcgtgaagttttcaaaatattttctggccgtaagacagtttttaccagtggaaattagtttccgaagt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
49547203 |
aactctcagagtcttagttgctgttttttcaatcgtgaagttttcaaaatattttctggccgtaagacagtttttacccgtggaaattagttcccgaagt |
49547302 |
T |
|
| Q |
196 |
agatataatgcatgaacctctaacccctattttaatactccaaagatatagactacattagttcattacgtgaaaaaattctatcatcactcatcagttt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49547303 |
agatataatgcatgaacctctaacccctattttaatactccaaagatataaactacattagttcattacgtgaaaaaattctatcatcactcatcagttt |
49547402 |
T |
|
| Q |
296 |
agttctccaacagtgcagagtgacccaacttaatccatcaattaattgcacaaagcttgatcaaattagtctctaaattaccacaaacagtag |
388 |
Q |
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| T |
49547403 |
agttctccaacagtgcagagtgacccaacttaatccatcaattaattgcacaaagtttgatcaaattagtctctaaattaccgcatacagtag |
49547495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 375
Target Start/End: Complemental strand, 47872682 - 47872526
Alignment:
| Q |
209 |
gaacctctaacccctattttaatactccaaagatatagactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacag |
308 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||| ||||| ||||| | ||||||| ||||| |
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| T |
47872682 |
gaacccctaacccctattttaatactccaaagatatagactccatcagttcattacatgacaaatttcta-------tcatcgatgtagttcttcaacaa |
47872590 |
T |
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| Q |
309 |
tgcagagtgacccaacttaatccatcaattaattgcacaaagcttgatcaaattagtctctaaatta |
375 |
Q |
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| T |
47872589 |
tgcagagtgtcacaacttaatccatca---aattgtgcaaaatttcatcaaattagtctctaaatta |
47872526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 339
Target Start/End: Complemental strand, 33857328 - 33857205
Alignment:
| Q |
217 |
aacccctattttaatactccaaagatatagactacattagttcatta---cgtgaaaaaattctatcatcactcatcag-tttagttctccaacagtgca |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| || || ||| |||| ||||| |||| |
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| T |
33857328 |
aacccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatca---attagtttttcttcttcaacaatgca |
33857232 |
T |
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| Q |
313 |
gagtgacccaacttaatccatcaatta |
339 |
Q |
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| ||| | ||||||||||||||||||| |
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| T |
33857231 |
gtgtgtcacaacttaatccatcaatta |
33857205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 339
Target Start/End: Original strand, 33923595 - 33923718
Alignment:
| Q |
217 |
aacccctattttaatactccaaagatatagactacattagttcatta---cgtgaaaaaattctatcatcactcatcag-tttagttctccaacagtgca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| || || ||| |||| ||||| |||| |
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| T |
33923595 |
aacccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatca---attagtttttcttcttcaacaatgca |
33923691 |
T |
|
| Q |
313 |
gagtgacccaacttaatccatcaatta |
339 |
Q |
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| ||| | ||||||||||||||||||| |
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| T |
33923692 |
gtgtgtcacaacttaatccatcaatta |
33923718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 44261669 - 44261730
Alignment:
| Q |
202 |
aatgcatgaacctctaacccctattttaatactccaaagatatagactacattagttcatta |
263 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| ||| ||||| |
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| T |
44261669 |
aatgcatgaacccctaacccctattttaatcctccaaagataaagactccatcagtccatta |
44261730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 14961874 - 14961756
Alignment:
| Q |
157 |
gtaagacagtttttaccagtggaaattagtttccgaagtagatataatg---catgaacctctaacccctattttaatactccaaagatatagactacat |
253 |
Q |
| |
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||||||||||| ||| ||||||| |||||||||| ||| | ||| |||| |||||||| || |||| ||||||||| ||||||| || |||| | ||| |
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| T |
14961874 |
gtaagacagttgttatcagtggacattagtttcccaaggacataaaatgcatcatgaacccctgacccatattttaatgctccaaatatgtagattccat |
14961775 |
T |
|
| Q |
254 |
tagttcattacgtgaaaaa |
272 |
Q |
| |
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|||| ||||| ||||||| |
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| T |
14961774 |
cagtttattacatgaaaaa |
14961756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 574404 - 574492
Alignment:
| Q |
159 |
aagacagtttttaccagtggaaattagtttccgaagtagatataatgcatgaacctctaaccccta-ttttaatactccaaagatatag |
246 |
Q |
| |
|
|||||||||||||| |||| | |||||||||| | | | ||| |||||||| || | |||||||| ||||||| |||||||||||||| |
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| T |
574404 |
aagacagtttttacaagtgaacattagtttcctatggacataaaatgcatgcactccaaacccctacttttaattctccaaagatatag |
574492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 55771104 - 55771061
Alignment:
| Q |
202 |
aatgcatgaacctctaacccctattttaatactccaaagatata |
245 |
Q |
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|||||||||||| | |||| |||||||||||||||||||||||| |
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| T |
55771104 |
aatgcatgaaccccaaacctctattttaatactccaaagatata |
55771061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 55835338 - 55835295
Alignment:
| Q |
202 |
aatgcatgaacctctaacccctattttaatactccaaagatata |
245 |
Q |
| |
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|||||||||||| | |||| |||||||||||||||||||||||| |
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| T |
55835338 |
aatgcatgaaccccaaacctctattttaatactccaaagatata |
55835295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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