View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_23 (Length: 400)
Name: NF1063_low_23
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 5 - 369
Target Start/End: Original strand, 15874086 - 15874450
Alignment:
| Q |
5 |
tctccaataatatagcatctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtag |
104 |
Q |
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||||||| |||| || |||||||||||||| ||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
15874086 |
tctccaacaataaagtatctctccatatgtgcatcagttggtcaaacttaaggtttagggcattcgggcattggtcatcaacatttcccataaagtgtag |
15874185 |
T |
|
| Q |
105 |
caaagaaaatccatccacaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatatta |
204 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874186 |
caaagaacatccatccacaaacaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatatta |
15874285 |
T |
|
| Q |
205 |
tcttcaatcattttaagcaaaagcttacatgcttcgttatcatctttatcaattgttttgccataattagcaacaaatattgatgtccatagaagcttgt |
304 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15874286 |
tcttcaatctttttaagcaaaagcttacatgcttcgttatcatctttatcaatttttttggcataattagcaacaaatattgatgtccatagaagcttgt |
15874385 |
T |
|
| Q |
305 |
aatgctctccttctttcagactttcattcttgtgatgaataggaccaaataatataatctttggt |
369 |
Q |
| |
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|||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
15874386 |
aatgctctccttctttcagatttttagcattgtgatgaataggaccaaatgatataatctttggt |
15874450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 369
Target Start/End: Complemental strand, 15899967 - 15899619
Alignment:
| Q |
21 |
atctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtagcaaagaaaatccatcc |
120 |
Q |
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| T |
15899967 |
atctctccatatgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatcc |
15899868 |
T |
|
| Q |
121 |
acaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatcattttaa |
220 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
15899867 |
acaaacaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatcttcaatattatcttcaatctttttaa |
15899768 |
T |
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| Q |
221 |
gcaaaagcttacatgcttcgttatcatctttatcaattgttttgccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttcttt |
320 |
Q |
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| T |
15899767 |
gcaaaagcatacatgcttcgttagcatctttatcaatttttttgccataatcagcaacaaatattgatgtccatagaagcttgtaatgctctccttcttt |
15899668 |
T |
|
| Q |
321 |
cagactttcattcttgtgatgaataggaccaaataatataatctttggt |
369 |
Q |
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|||| ||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
15899667 |
cagatttttagcattgtgatgaataggaccaaatgatataatctttggt |
15899619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 369
Target Start/End: Complemental strand, 15920995 - 15920647
Alignment:
| Q |
21 |
atctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtagcaaagaaaatccatcc |
120 |
Q |
| |
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|||||||||||||| ||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
15920995 |
atctctccatatgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatcc |
15920896 |
T |
|
| Q |
121 |
acaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatcattttaa |
220 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
15920895 |
acaaacaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatattcaatattatcttcaatctttttaa |
15920796 |
T |
|
| Q |
221 |
gcaaaagcttacatgcttcgttatcatctttatcaattgttttgccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttcttt |
320 |
Q |
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|||||||| |||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920795 |
gcaaaagcatacatgcttcgttaacatctttatcaatttttttgccataataagcaacaaatattgatgtccatagaagcttgtaatgctctccttcttt |
15920696 |
T |
|
| Q |
321 |
cagactttcattcttgtgatgaataggaccaaataatataatctttggt |
369 |
Q |
| |
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|||| ||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
15920695 |
cagatttttagcattgtgatgaataggaccaaatgatataatctttggt |
15920647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 14060516 - 14060865
Alignment:
| Q |
20 |
catctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtagcaaagaaaatccatc |
119 |
Q |
| |
|
||||||||||||| ||||| | | ||||||||||||||||||| | || || | |||||||| |||||| |||| || |||||||| ||| ||||||| |
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| T |
14060516 |
catctctccatatatacatcaattggtcaaacttaagatttagcccttcgggatattggtcatcgacatttcccatgaaatgtagcaaggaacatccatc |
14060615 |
T |
|
| Q |
120 |
cacaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatcatttta |
219 |
Q |
| |
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||| |||||| |||||||||||||||| |||||| | |||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||| | ||| |
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| T |
14060616 |
cacgaacaatatccaagcaagatcattgtcattgaatccttcaattgcatcttcagtgaacatgttcttcaattcttcaatattatcttcaatcttgtta |
14060715 |
T |
|
| Q |
220 |
agcaaaagcttacatgcttcgttatcatctttatcaattgttttgccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctt |
319 |
Q |
| |
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|||||||| || ||||||| |||| |||||| || ||| ||||||||| | ||| |||| | || ||||||||||| ||||| ||||||||||||| |
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| T |
14060716 |
agcaaaagtttgcatgcttggttaccatcttgattgatttctttgccatattcctcaagaaatgtagaggtccatagaagtttgtactgctctccttctt |
14060815 |
T |
|
| Q |
320 |
tcagactttcattcttgtgatgaataggaccaaataatataatctttggt |
369 |
Q |
| |
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| |||| || ||| |||||||| || ||||||||| |||||||||||||| |
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| T |
14060816 |
taagacatttattattgtgatggatcggaccaaatgatataatctttggt |
14060865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 14049145 - 14049479
Alignment:
| Q |
20 |
catctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtagcaaagaaaatccatc |
119 |
Q |
| |
|
||||||||||||||||||| | | | ||||||||||||||||| | || || | |||||||| |||||| ||||||| || ||||| ||| ||||||| |
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| T |
14049145 |
catctctccatatgtacatcaattgatcaaacttaagatttagcccttcaggatattggtcatcgacattttccataaaatgcagcaaggaacatccatc |
14049244 |
T |
|
| Q |
120 |
cacaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatcatttta |
219 |
Q |
| |
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||| |||||| ||||||||||||| || |||||| | |||||||||||||| || |||||||| ||||||| | | ||||||||||||||||| | ||| |
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| T |
14049245 |
cacgaacaatatccaagcaagatcgttgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgtta |
14049344 |
T |
|
| Q |
220 |
agcaaaagcttacatgcttcgttatcatctttatcaattgttttgccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctt |
319 |
Q |
| |
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|||||||| || || |||| || |||||| || ||| ||||||||| | |||||||| | |||||||| ||||||||||||||||||||||||| |
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| T |
14049345 |
agcaaaagtttgcaggcttggtggccatcttgattgatttgtttgccatattcctcaacaaatgtagatgtccacagaagcttgtaatgctctccttctt |
14049444 |
T |
|
| Q |
320 |
tcagactttcattcttgtgatgaataggaccaaat |
354 |
Q |
| |
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| |||| |||| | |||||||| || ||||||||| |
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| T |
14049445 |
taagacattcactattgtgatggatgggaccaaat |
14049479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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