View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_low_24 (Length: 398)

Name: NF1063_low_24
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_low_24
NF1063_low_24
[»] chr3 (5 HSPs)
chr3 (81-301)||(43201912-43202135)
chr3 (88-275)||(28592605-28592792)
chr3 (167-279)||(13477077-13477189)
chr3 (173-278)||(51469206-51469311)
chr3 (251-279)||(37987253-37987281)
[»] chr7 (2 HSPs)
chr7 (81-279)||(48717312-48717507)
chr7 (227-279)||(48718172-48718224)
[»] chr8 (2 HSPs)
chr8 (132-284)||(14753938-14754086)
chr8 (167-268)||(3043273-3043374)
[»] scaffold0022 (1 HSPs)
scaffold0022 (149-231)||(148442-148523)
[»] chr4 (2 HSPs)
chr4 (149-231)||(12919653-12919734)
chr4 (251-279)||(40496081-40496109)
[»] chr1 (2 HSPs)
chr1 (146-270)||(25084536-25084659)
chr1 (252-280)||(37576942-37576970)
[»] chr5 (1 HSPs)
chr5 (168-279)||(33470400-33470511)
[»] chr2 (1 HSPs)
chr2 (208-255)||(45632494-45632541)
[»] scaffold0418 (1 HSPs)
scaffold0418 (251-279)||(5925-5953)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 81 - 301
Target Start/End: Complemental strand, 43202135 - 43201912
Alignment:
Q  81 gtagcatagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaaga---tgagagcagcgatatgttttt 177  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||   |||||||||||||||||||||    
T  43202135 gtagcaaatggatgatcaattatgtaatttgtctgcaagaagaacataaacgtgaatcccttcaagaagaagaagaagatgagagcagcgatatgttttt 43202036  T
Q  178 ctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatccattgaca 277  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| || |||| || ||||||||||||||||| ||||||||||||| ||||||||||||    
T  43202035 ctttgaagagtcctcacataaacaattagctgaataaatgagagtcactaagtttaaaataaaggacggctatgatttggtgtcaacaaatccattgaca 43201936  T
Q  278 ccgagtgacccaaactcttaatat 301  Q
    |||| ||| || ||||| ||||||    
T  43201935 ccgaatgatcctaactcctaatat 43201912  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 88 - 275
Target Start/End: Original strand, 28592605 - 28592792
Alignment:
Q  88 agggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaagatgagagcagcg------atatgtttttcttt 181  Q
    |||||||||| ||| |||||||||||||    ||||||||||||||||||| ||||||||||||||   |||||||| ||      ||||| ||||||||    
T  28592605 agggatgatcgattgtgtaatttgtctg----aagaacataaacatgagtcacttcaagaagaaga---tgagagcaacgtggtatatatgcttttcttt 28592697  T
Q  182 gaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtc-aacgaatccattga 275  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||| ||||||||||||||    
T  28592698 gaagagtccccacgtgaacaattagctgaataaatgagagccattaagattaaaataaatgacggttatgatttggtgtcaaacgaatccattga 28592792  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 13477189 - 13477077
Alignment:
Q  167 gatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacga 266  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||  |||||||| | || ||  |||||||||||| ||    
T  13477189 gatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggttaggatttggtgtcaatga 13477090  T
Q  267 atccattgacacc 279  Q
    || | ||||||||    
T  13477089 attcgttgacacc 13477077  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 51469206 - 51469311
Alignment:
Q  173 tttttctttgaagagtccccacatgaacaa-ttagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatcca 271  Q
    |||||||||||||||| ||||| ||||||| || || ||||||||| |||||||||||||| ||| |||| | |||||  |||||||||||||||||||     
T  51469206 tttttctttgaagagttcccacgtgaacaagttcgc-gaataaatgtgagccattaagattaaaacaaagaatggctaagatttggtgtcaacgaatccg 51469304  T
Q  272 ttgacac 278  Q
    |||||||    
T  51469305 ttgacac 51469311  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 37987281 - 37987253
Alignment:
Q  251 aatttggtgtcaacgaatccattgacacc 279  Q
    |||||||||||||||||||||||||||||    
T  37987281 aatttggtgtcaacgaatccattgacacc 37987253  T

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Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 81 - 279
Target Start/End: Complemental strand, 48717507 - 48717312
Alignment:
Q  81 gtagcatagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaagatgagagcagcgatatgtttttctt 180  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||    
T  48717507 gtagcaaatggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaaga---tgagaacagcgatatgtttttctt 48717411  T
Q  181 tgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatccattgacacc 279  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| | |||||||||||||| |||||||||||    
T  48717410 tcaagagtccccacatgaacaattagctgaataaatgagagccactaagattaaaatgaaggacggctatgagttggtgtcaacgaacccattgacacc 48717312  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 48718172 - 48718224
Alignment:
Q  227 aagattgaaataaaggacggctataatttggtgtcaacgaatccattgacacc 279  Q
    |||||| ||||||| ||||||||| |||||||||||||| |||||||||||||    
T  48718172 aagattaaaataaacgacggctatgatttggtgtcaacggatccattgacacc 48718224  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 132 - 284
Target Start/End: Original strand, 14753938 - 14754086
Alignment:
Q  132 atgagtcccttcaagaagaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat 231  Q
    |||||| ||||||||||||||| || ||| ||||   |||||||||||||||||||||||||| ||||||| |   |||||||||| |||||||||||||    
T  14753938 atgagtgccttcaagaagaagatga-gagggcag---tatgtttttctttgaagagtccccacgtgaacaaattcgtgaataaatgtgagccattaagat 14754033  T
Q  232 tgaaataaaggacggctataatttggtgtcaacgaatccattgacaccgagtg 284  Q
    | ||| |||| |||||||  |||| |||||||| ||||| |||||||| ||||    
T  14754034 taaaacaaagaacggctaggatttagtgtcaacaaatccgttgacacctagtg 14754086  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 3043374 - 3043273
Alignment:
Q  167 gatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacga 266  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||  |||||||| | || ||  |||||||||||| ||    
T  3043374 gatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggttaggatttggtgtcaatga 3043275  T
Q  267 at 268  Q
    ||    
T  3043274 at 3043273  T

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Target: scaffold0022 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 148523 - 148442
Alignment:
Q  149 gaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat 231  Q
    ||||||||||||||  | |||||||||||||||||||||||||||| |||||||| |  |||||||||| |||||||||||||    
T  148523 gaagaagatgagagt-gtgatatgtttttctttgaagagtccccacctgaacaatcaagtgaataaatgtgagccattaagat 148442  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 12919734 - 12919653
Alignment:
Q  149 gaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat 231  Q
    ||||||||||||||  | |||||||||||||||||||||||||||| | || |||||  |||||||||| || ||||||||||    
T  12919734 gaagaagatgagagt-gtgatatgtttttctttgaagagtccccacgttaataattaattgaataaatgtgaaccattaagat 12919653  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 40496081 - 40496109
Alignment:
Q  251 aatttggtgtcaacgaatccattgacacc 279  Q
    |||||||||||||||||||||||||||||    
T  40496081 aatttggtgtcaacgaatccattgacacc 40496109  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 270
Target Start/End: Complemental strand, 25084659 - 25084536
Alignment:
Q  146 gaagaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacg 245  Q
    |||||||||||||||||  | |||||||||||||||||||||||| ||| | |||||| |  | |||||||| | |||||||||||  ||| |||| | |    
T  25084659 gaagaagaagatgagagt-gtgatatgtttttctttgaagagtccacaccttaacaatcaagtaaataaatgtgggccattaagatcaaaacaaagaatg 25084561  T
Q  246 gctataatttggtgtcaacgaatcc 270  Q
    | ||  |||||||||||||| ||||    
T  25084560 gttaggatttggtgtcaacggatcc 25084536  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 37576970 - 37576942
Alignment:
Q  252 atttggtgtcaacgaatccattgacaccg 280  Q
    |||||||||||||||||||||||||||||    
T  37576970 atttggtgtcaacgaatccattgacaccg 37576942  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 279
Target Start/End: Complemental strand, 33470511 - 33470400
Alignment:
Q  168 atatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaa 267  Q
    |||||||||||||| ||||||| |||  | ||||||||  |||||||||| |||||||||||||  |||||||| | || |   ||||||||||||| ||    
T  33470511 atatgtttttctttaaagagtctccatgttaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggtttggatttggtgtcaacaaa 33470412  T
Q  268 tccattgacacc 279  Q
    | | ||||||||    
T  33470411 ttcgttgacacc 33470400  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 45632541 - 45632494
Alignment:
Q  208 tgaataaatgagagccattaagattgaaataaaggacggctataattt 255  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  45632541 tgaataaatgatagccactaagattaaaataaaggacggctatgattt 45632494  T

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Target: scaffold0418 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 5953 - 5925
Alignment:
Q  251 aatttggtgtcaacgaatccattgacacc 279  Q
    |||||||||||||||||||||||||||||    
T  5953 aatttggtgtcaacgaatccattgacacc 5925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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