View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_25 (Length: 370)
Name: NF1063_low_25
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 156 - 304
Target Start/End: Original strand, 52629664 - 52629826
Alignment:
| Q |
156 |
gaatagaattatgtgtgataaaaaatttgtgtataatgtgaaagtgattgtcatttcctatcatcttctccattttctattgtctcaatttgct------ |
249 |
Q |
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| T |
52629664 |
gaatagaattatgtgtaataaaaaatttgtgtataatgtgaaagtgattgtcatttcctatcatcttctccattttctattggctcaatttgctcctttc |
52629763 |
T |
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| Q |
250 |
--------accacccacttacggtggtcaaaatctagttgctcaaagtttattatctttcatg |
304 |
Q |
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| T |
52629764 |
atataataaccacccacttacggtggtcaaaatctagttgctcaaagtttattatctttcatg |
52629826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 52629521 - 52629591
Alignment:
| Q |
13 |
aatatttcatagaaaagacatatcatgtgccacagaaccatgcatgttgtaccgacttcaaaacatcacaa |
83 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52629521 |
aatatttcatagaaaagacatatcatgtgctacagaaccatgcatgttgtaccgacttcaaaacatcacaa |
52629591 |
T |
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