View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_27 (Length: 358)
Name: NF1063_low_27
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 39678599 - 39678461
Alignment:
| Q |
36 |
aaaataaactaagcatgcactttctgtatttgatgcactggtttgcttttttgatcatgaactgatttattctcaaggtgtatagaggaccttcagataa |
135 |
Q |
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| T |
39678599 |
aaaataaactaagcatgcactttctgtattcgatgcactggtttgcttttttgatcatgaactgatttattctcaaggtgtatagaggaccttcagataa |
39678500 |
T |
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| Q |
136 |
ccacggtgtgctgcagaaatcgaatcaaatccctatttg |
174 |
Q |
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| T |
39678499 |
ccacggtgtgctgcagaaatcgaatcaaatccctatttg |
39678461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 234 - 358
Target Start/End: Complemental strand, 39678326 - 39678202
Alignment:
| Q |
234 |
tttataatattgtttcgatcatattagaatatcttatttaattttctaggatctgtgtaagtattgtggatattctcttaggattagttttactttactt |
333 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39678326 |
tttataatattatttcgatcatattagaatatcttatttaattttctaggatctgtgtaagtattgtggatattctcttaggattagttttactttactt |
39678227 |
T |
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| Q |
334 |
acatattattttgatttgtttctta |
358 |
Q |
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| T |
39678226 |
acatattattttgatttgtttctta |
39678202 |
T |
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