View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1063_low_3 (Length: 707)
Name: NF1063_low_3
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 13 - 611
Target Start/End: Original strand, 28888673 - 28889272
Alignment:
| Q |
13 |
aatatataacctatgaatttattgtagagaaatggagcagaaattgataccaaggaaatagggtatgaaacctatgagttagctgaaaaatgtttgaaaa |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28888673 |
aatatataacatatgaatttattgtagagaaatggagcagaaattgataccaaggaaatagggtatgaaacctatgagttagctgaaaaatgtttgaaaa |
28888772 |
T |
|
| Q |
113 |
caaacttctatggagtagaaagagtaactgaagctcttgttcctcttcttcaactatccacttctccaacaattgtcaatgtttcctccagagcaggact |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28888773 |
caaacttctatggagtagaaagagtaacagaagctcttgttcctcttcttcaactatccacttctccaacaattgtcaatgtttcctccagagcaggact |
28888872 |
T |
|
| Q |
213 |
attgaaagtacaannnnnnnagaatatgttgtttggattcttcatgtctctataaatcatctgaccatagatcaatcgttgaattaatataaaatttgat |
312 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
28888873 |
attgaaagtacaatttttttagaatatgttgtttggattcttcatatctctatagatcatctgaccatagattaatcgttgaattaatataaaatctgat |
28888972 |
T |
|
| Q |
313 |
agtttaacaattgagctatggtcagatgaactataaaagacacatgatgatcaatgtctaaaagctggttgatcatttcac-tataatcattgtgattta |
411 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
28888973 |
agtttaacaattgaactatggtcagatgaactataaaagacacatgatgatcaatgtctaaaagctagttgatcatttcacctataatcattgtgattta |
28889072 |
T |
|
| Q |
412 |
ttattgttaatattattatttaatttaactgtttcagaatatatcaaatgagtgggctagaaaagtgtttaatgacattgaaaacctaacaaaggaaaaa |
511 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28889073 |
ttattcttaatattattatttaatttaactgtttcagaatatatcaaatgagtgggctagaatagtgtttaatgacattgaaaacctaacaaaggaaaaa |
28889172 |
T |
|
| Q |
512 |
atagatgaggtgctaaaagagtttgagaaagattacaaagaaggatcactagagatcaaagattggccaacttttgcttctgcttatacaatgtcaaaag |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28889173 |
atagatgaggtgctaaaagagtttgagaaagattacaaagaaggatcactagagatcaaagattggccaacttttgcttctgcttatacaatgtcaaaag |
28889272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 441 - 582
Target Start/End: Original strand, 28886271 - 28886412
Alignment:
| Q |
441 |
tgtttcagaatatatcaaatgagtgggctagaaaagtgtttaatgacattgaaaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaa |
540 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| || |||||| |||| |||||||| || ||| | || |||||||||||||| |||||||||||| || |
|
|
| T |
28886271 |
tgtttcagaatataccaaatcaatgggctaaaagggtgtttgatgatattgaaaatcttacagaagagaaaatagatgaggtactaaaagagtttatcaa |
28886370 |
T |
|
| Q |
541 |
agattacaaagaaggatcactagagatcaaagattggccaac |
582 |
Q |
| |
|
||| | ||||||||| |||||||| | ||||| |||||||| |
|
|
| T |
28886371 |
agacttcaaagaaggttcactagaaaacaaagggtggccaac |
28886412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 582
Target Start/End: Original strand, 28881490 - 28881631
Alignment:
| Q |
441 |
tgtttcagaatatatcaaatgagtgggctagaaaagtgtttaatgacattgaaaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaa |
540 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| || |||||| |||| |||||||| || ||| | || | ||||||| | || |||| ||||||| || |
|
|
| T |
28881490 |
tgtttcagaatataccaaatcaatgggctaaaagggtgtttgatgatattgaaaatcttacagaagagagaatagataaagtactaatagagtttatcaa |
28881589 |
T |
|
| Q |
541 |
agattacaaagaaggatcactagagatcaaagattggccaac |
582 |
Q |
| |
|
||||| ||||||||| |||||||| | ||||| |||||||| |
|
|
| T |
28881590 |
agatttcaaagaaggttcactagaaaacaaagggtggccaac |
28881631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 13 - 611
Target Start/End: Original strand, 36016838 - 36017447
Alignment:
| Q |
13 |
aatatataacctatgaatttattgtagagaaatggagcagaaattgataccaaggaaatagggtatgaaacctatgagttagctgaaaaatgtttgaaaa |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36016838 |
aatatataacatatgaatttattgtagagaaatggagcagaaattgataccaaggaa-tagggtatgaaacctatgagttagctgaaaaatgtttgaaaa |
36016936 |
T |
|
| Q |
113 |
caaacttctatggagtagaaagagtaactgaagctcttgttcctcttcttcaactatccacttctccaacaattgtcaatgtttcctccagagcaggact |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36016937 |
caaacttctatggagtagaaagagtaactgaagctcttgttcctcttcttcaactatccacttctccaacaattgtcaatgtttcctccagagcaggact |
36017036 |
T |
|
| Q |
213 |
attgaaagtacaannnnnnnagaatatgttgtttggattcttcatgtctctataaatcatctgaccatagatcaatcgttgaattaatataaaatttgat |
312 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36017037 |
attgaaagtacaatttttttagaatatgttgtttggattcttcatgtctctatagatcatctgaccatagatcaatcgttgaattaatataaaatctgat |
36017136 |
T |
|
| Q |
313 |
agtttaacaattgagctatggtcagatgaactataaaagacacatgatgatcaatgtctaaaagctggttgatcatttcactataatcattgtgat---- |
408 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36017137 |
agtttaacaattgagctatagtcagatgaactataaaagacacatgatgatcaatgtctaaaagctggttgatcatttcactataatcattgtgatttat |
36017236 |
T |
|
| Q |
409 |
--------ttattattgttaatattattatttaatttaactgtttcagaatatatcaaatgagtgggctagaaaagtgtttaatgacattgaaaacctaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36017237 |
tattgttattattattgttaatattattatttaatttaactgtttcagaatatatcaaatgactgggctagaaaagtgtttaatgacattgacaacctaa |
36017336 |
T |
|
| Q |
501 |
caaaggaaaaaatagatgaggtgctaaaagagtttgagaaagattacaaagaaggatcactagagatcaaagattggccaacttttgcttctgcttatac |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36017337 |
caaaggaaaaaatagatgaggtgctaaaagagtttgagaaaaattacaaagaaggatcactagagatcaaagattggccaacttttgcttctgcttatac |
36017436 |
T |
|
| Q |
601 |
aatgtcaaaag |
611 |
Q |
| |
|
||||||||||| |
|
|
| T |
36017437 |
aatgtcaaaag |
36017447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 611
Target Start/End: Original strand, 11927748 - 11927903
Alignment:
| Q |
456 |
caaatgagtgggctagaaaagtgtttaatgacattgaaaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaaagattacaaagaagg |
555 |
Q |
| |
|
|||||||||||| ||| ||| ||| ||||||| ||||| | ||||| |||||| | | ||| ||||| | ||||||| |||||||||||||||||| |
|
|
| T |
11927748 |
caaatgagtgggtaagaggagtatttgatgacatcaaaaacgttacaaatgaaaaacttggtgaagtgcttagagagtttctgaaagattacaaagaagg |
11927847 |
T |
|
| Q |
556 |
atcactagagatcaaagattggccaacttttgcttctgcttatacaatgtcaaaag |
611 |
Q |
| |
|
| || | || | ||| |||||||||| |||| ||||| ||| |||||| |||||| |
|
|
| T |
11927848 |
agcattggaaacaaaaaattggccaacgtttgtttctggttacacaatggcaaaag |
11927903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 611
Target Start/End: Complemental strand, 11944075 - 11943920
Alignment:
| Q |
456 |
caaatgagtgggctagaaaagtgtttaatgacattgaaaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaaagattacaaagaagg |
555 |
Q |
| |
|
||||||||||||| ||| ||| ||| ||||||| | ||| | ||||| |||||| | | ||| ||||| | ||||||| |||||||||||||||||| |
|
|
| T |
11944075 |
caaatgagtgggcaagaggagtatttgatgacatcaataacgttacaaatgaaaaacttggtgaagtgcttagagagtttctgaaagattacaaagaagg |
11943976 |
T |
|
| Q |
556 |
atcactagagatcaaagattggccaacttttgcttctgcttatacaatgtcaaaag |
611 |
Q |
| |
|
| || | || | ||| |||||||||| |||| ||||| ||| |||||| |||||| |
|
|
| T |
11943975 |
agcattggaaacaaaaaattggccaacgtttgtttctggttacacaatggcaaaag |
11943920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 11944438 - 11944318
Alignment:
| Q |
80 |
aaacctatgagttagctgaaaaatgtttgaaaacaaacttctatggagtagaaagagtaactgaagctcttgttcctcttcttcaactatccacttctcc |
179 |
Q |
| |
|
|||| ||||| ||||| ||| ||||| | ||| |||||||| ||| | ||||||||||||||||||||| |||| || || || |||| ||||| || |
|
|
| T |
11944438 |
aaacttatgaattagccgaagaatgtgttgaaataaacttctttggtgctgaaagagtaactgaagctcttattcccctgctccagttatctacttcacc |
11944339 |
T |
|
| Q |
180 |
aacaattgtcaatgtttcctc |
200 |
Q |
| |
|
| |||||||||||| ||||| |
|
|
| T |
11944338 |
tagaattgtcaatgtctcctc |
11944318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University