View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_34 (Length: 316)
Name: NF1063_low_34
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_34 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 96 - 316
Target Start/End: Complemental strand, 15913215 - 15912995
Alignment:
| Q |
96 |
tgtattttctttgaaatatgttctttcacaagaacatgatcagagctttgaagcatcatgtggctatcattttctctgagtg--gcgtgtttgctttgtt |
193 |
Q |
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| T |
15913215 |
tgtattttctttgaaatatgttctttcacaagaacatgatcaaagctttgaagcatcatgtggctatcattttctgtgtgtgtggcgtgtttgctttgtt |
15913116 |
T |
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| Q |
194 |
gttattttacaacagcccaatgatagaaataggtttcatggagagaggtataggattaccaacttcatgagctatctcgtcgttgaaactcttgagtgct |
293 |
Q |
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| T |
15913115 |
gttattttacaacagcccaatgatggaaataggtttcatggagag--gtataggattaccaacttcatcagctacctcgtcgttgaaactcttgagtgct |
15913018 |
T |
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| Q |
294 |
atgtgacctcttggaaaatcaat |
316 |
Q |
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| T |
15913017 |
atgtgacctcttggaaaatcaat |
15912995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 121 - 316
Target Start/End: Original strand, 38214954 - 38215152
Alignment:
| Q |
121 |
tcacaagaacatgatcag---agctttgaagcatcatgtggctatcattttctctgagtg--gcgtgtttgctttgttgttattttacaacagcccaatg |
215 |
Q |
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| T |
38214954 |
tcacaagaacatgatcagcagagttttgaagcatcctgtggctatcattttctgtgtgtgtaacatgttttctttgatgatatcttccaacagcccaatg |
38215053 |
T |
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| Q |
216 |
atagaaataggtttcatggagagaggtataggattaccaacttcatgagctatctcgtcgttgaaactcttgagtgctatgtgacctcttggaaaatcaa |
315 |
Q |
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| T |
38215054 |
atgaagataagtttcatg--gaggggtataggattaccatcttcatcaacaacttcagcattgaaactcttgagtgctacatgacctcttggaaaatcaa |
38215151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 38243906 - 38244039
Alignment:
| Q |
181 |
tgtttgctttgttgttattttacaacagcccaatgatagaaataggtttcatggagagaggtataggattaccaacttcatgagctatctcgtcgttgaa |
280 |
Q |
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| T |
38243906 |
tgtttactttgatgatatcttccaacaccccaatgatggagataagtttcatggagag--gtataggattaccaacttcatcaactacttcagcattgaa |
38244003 |
T |
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| Q |
281 |
actcttgagtgctatgtgacctcttggaaaatcaat |
316 |
Q |
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| T |
38244004 |
actcttgagtgcaatatgacctcttggaaaatcaat |
38244039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 121 - 316
Target Start/End: Original strand, 38254107 - 38254302
Alignment:
| Q |
121 |
tcacaagaacatgatcagagctttgaagcatcatgtggctatcattttctctgagtg--gcgtgtttgctttgttgttattttacaacagcccaatgata |
218 |
Q |
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| T |
38254107 |
tcacaagaacatgatcagagttttgtagcatcatgtggctatcattttctgtgtgtgtaacatgttttctttgatgatatcttccaacaacccaatgatg |
38254206 |
T |
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| Q |
219 |
gaaataggtttcatggagagaggtataggattaccaacttcatgagctatctcgtcgttgaaactcttgagtgctatgtgacctcttggaaaatcaat |
316 |
Q |
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| T |
38254207 |
gagataagtttcatg--gagaggtataggatttccagattcatcaactacttcagcatggaaatccttgattgctatatggcctcttggaaaatcaat |
38254302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 316
Target Start/End: Original strand, 38227379 - 38227572
Alignment:
| Q |
123 |
acaagaacatgatcagagctttgaagcatcatgtggctatcattttctctgagtgg--cgtgtttgctttgttgttattttacaacagcccaatgataga |
220 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||| |||| || ||| | | ||| ||||| | | | || |||| |||||||| || |
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| T |
38227379 |
acaagaacatgatcagagttttgaagcatcatgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtctttgaacaagccaatgatgga |
38227478 |
T |
|
| Q |
221 |
aataggtttcatggagagaggtataggattaccaacttcatgagctatctcgtcgttgaaactcttgagtgctatgtgacctcttggaaaatcaat |
316 |
Q |
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| T |
38227479 |
gataggtttcatggagag--gtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccctcttggaaaatcaat |
38227572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 316
Target Start/End: Original strand, 38248994 - 38249187
Alignment:
| Q |
123 |
acaagaacatgatcagagctttgaagcatcatgtggctatcattttc--tctgagtggcgtgtttgctttgttgttattttacaacagcccaatgataga |
220 |
Q |
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||||||||||||||| || |||||||||||||||||||| ||| ||| | || ||| | | ||| ||||| | | | | ||||| |||||||| || |
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| T |
38248994 |
acaagaacatgatcatagttttgaagcatcatgtggctaccatcttctgtgtgtgtgacatattttctttgataatgtcattcaacaagccaatgatgga |
38249093 |
T |
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| Q |
221 |
aataggtttcatggagagaggtataggattaccaacttcatgagctatctcgtcgttgaaactcttgagtgctatgtgacctcttggaaaatcaat |
316 |
Q |
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|||||||||||| ||| ||||||||||||||| |||||| | | | || | |||||||||||||||||||| ||| | |||||||||||||| |
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| T |
38249094 |
gataggtttcatg--gaggggtataggattaccatcttcatcaacaacttcagcattgaaactcttgagtgctatatgatcacttggaaaatcaat |
38249187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 38239031 - 38239071
Alignment:
| Q |
276 |
ttgaaactcttgagtgctatgtgacctcttggaaaatcaat |
316 |
Q |
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| T |
38239031 |
ttgaaactcttgagtgctacatgacctcttggaaaaccaat |
38239071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 17434509 - 17434556
Alignment:
| Q |
123 |
acaagaacatgatcagagctttgaagcatcatgtggctatcattttct |
170 |
Q |
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| T |
17434509 |
acaagaacataatcagagttttgaagcatcctatggctatcattttct |
17434556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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