View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_36 (Length: 309)
Name: NF1063_low_36
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_36 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 77 - 309
Target Start/End: Original strand, 34407615 - 34407846
Alignment:
| Q |
77 |
aaaacaatgtctatatatatgttggagttaagtaagggaaaaagtatactcaaatatctatatgtnnnnnnntatatttaagaatgaagtttaatgtgtg |
176 |
Q |
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| T |
34407615 |
aaaacaatgtctatatatatgttggagttaagcaagggaaaaagtatactcaaatatctatatataaaaatgactatttaagaatgaagtttaatgtgtg |
34407714 |
T |
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| Q |
177 |
aacataatcatgtcaagagcaatagttcaaaaagacaacaatggaaaagccaaaaatgattnnnnnnngagttgaggagaaacatgaagttaatttcttc |
276 |
Q |
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| T |
34407715 |
aacataatcatgtcaagagcaatagttcaaaa-gacaacaatggaaaagccaagaatgattaaaaaaagagttgaggagaaacatgaagttaatttcttc |
34407813 |
T |
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| Q |
277 |
aaattcccccaccaatctatgtatattggattc |
309 |
Q |
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| T |
34407814 |
aaattcccccaccaatctatgtatattggattc |
34407846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 34407525 - 34407575
Alignment:
| Q |
30 |
aaatatagaaaatttaatataattacggggtcttgtaaatttactataaaa |
80 |
Q |
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| T |
34407525 |
aaatatagaaaatttaatataattacggggtcttgtaaatttactataaaa |
34407575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 40687591 - 40687542
Alignment:
| Q |
157 |
agaatgaagtttaatgtgtgaacataatcatgtcaagagcaatagttcaaaa |
208 |
Q |
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| T |
40687591 |
agaatgaagtttaatgtg--atcataatcatgtcaagagtagtagttcaaaa |
40687542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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