View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_38 (Length: 303)
Name: NF1063_low_38
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 30516488 - 30516756
Alignment:
| Q |
8 |
ccaagaatatccctagtttggcctcctcctccattctcttcaccttgcacatgtctacgtttagaagggtgcatttgtgaaaaatcacatgcattattat |
107 |
Q |
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| T |
30516488 |
ccaagaaaatccctagtttgccctcctcctccattctcttcaccttgcacatgtctacgtttagaagggtgcatttgtgaaaaatcacatgcattattat |
30516587 |
T |
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| Q |
108 |
gatcttcctcattgccaagactaatgagtaatgaacttgaagtaccatacataccagtaccaccaaacttgttcacatcattagtactattattattact |
207 |
Q |
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| T |
30516588 |
gatcttcctcattgccaagactaatgagtaatgaacttgaagtaccatacataccagtaccaccaaacttgttcacatcattagtactattattattact |
30516687 |
T |
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| Q |
208 |
gcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttg |
276 |
Q |
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| T |
30516688 |
gcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttg |
30516756 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 38894480 - 38894549
Alignment:
| Q |
207 |
tgcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttg |
276 |
Q |
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| T |
38894480 |
tgcatctcaaacctaagcttccaaggaataatgattcagttgaagttgtcccaatttgagcagctttttg |
38894549 |
T |
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