View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_4 (Length: 676)
Name: NF1063_low_4
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 17 - 648
Target Start/End: Original strand, 50140542 - 50141169
Alignment:
| Q |
17 |
tgaaatataattacaattatatgattaaactattagatggtgacctatcacgttttatttttnnnnnnnnnnntggagtaaaaggtcattttgatttgtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50140542 |
tgaaatataattacaattatatgattaaactattagatggtgacctatcacgttttatttttaaaaaaaaa--tggagtaaaaggtcattttgatttgtg |
50140639 |
T |
|
| Q |
117 |
agtttgtgattcttttttgaatgaaaaatgttagttgttagattaatatttactcatttgtcggatttaaatttaagatcttcaacttcttatcgtttaa |
216 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
50140640 |
agtttgtgattcttttttgaatgataaatgtttgttgttagattaatatttcctcatttgtcgggtttaaatttaagatctccaacttcttatcgtttaa |
50140739 |
T |
|
| Q |
217 |
ctcacatcagtttagctacccaacccc-aattgcgagtgtgtgatgttgtcactctaattgcaaataccttcttagagcctcttatgttataatattttt |
315 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50140740 |
ctcacatcaatttagctacccaacccccaattgcgagtgtgtgatgttgtcactctaattgcaaataccttcttagagcctcttatgttataatattttt |
50140839 |
T |
|
| Q |
316 |
caattaaatcaactaacgaagaacacatttgaagattaaattaacaacttaaaaacatatatgtagactaaaatgactaatcaaatatatatttgaagat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
50140840 |
caattaaatcaactaacgaagaacacatttgaagattaaattaacaatttaaaaacatatatgtagactaaaatgactaatcaaatatatatttaaaaat |
50140939 |
T |
|
| Q |
416 |
gtgtttacaattttgatatatccgtgaactatagcaaactcgtctcacacattcatagatcaatatggttggttnnnnnnnnnnnnggcatttattctat |
515 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
50140940 |
gtgtttacaattttgatacatccgtgaactatagcaaactcgtctcacacattcatagatcaatatggttggtt---aaaaaaaaagtcatttattctat |
50141036 |
T |
|
| Q |
516 |
aactctaatcgaagaagtatgaattaacaattacacacacgtacacgtccttggtatctaactttggttagacaagacaaattcaatgctctaatcaaat |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50141037 |
aactctaatcgaagaagtatgaattaacaattacacacacgtacacgtccttggtatctaactttggttagacaagacaaatttaatgctctaatcaaat |
50141136 |
T |
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| Q |
616 |
atgctttctttgatgctattttgccatctcttt |
648 |
Q |
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| T |
50141137 |
atgctttctttgatgctattttgccatctcttt |
50141169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 44751944 - 44751978
Alignment:
| Q |
144 |
atgttagttgttagattaatatttactcatttgtc |
178 |
Q |
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| T |
44751944 |
atgttagtggttagattaatatttactcatttgtc |
44751978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 17080025 - 17079986
Alignment:
| Q |
146 |
gttagttgttagattaatatttactcatttgtcggattta |
185 |
Q |
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| T |
17080025 |
gttagttgttacattaatatttactcatttgtcgggttta |
17079986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 9834623 - 9834665
Alignment:
| Q |
129 |
ttttttgaatgaaaaatgttagttgttagattaatatttactc |
171 |
Q |
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| T |
9834623 |
ttttttgaatgacatatgttagttgttaggttaatatttactc |
9834665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 12020170 - 12020125
Alignment:
| Q |
129 |
ttttttgaatgaaaaatgttagttgttagattaatatttactcatt |
174 |
Q |
| |
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||||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
12020170 |
ttttttgaatggcaaatgttaatagttagattaatatttactcatt |
12020125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 13380506 - 13380474
Alignment:
| Q |
146 |
gttagttgttagattaatatttactcatttgtc |
178 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
13380506 |
gttagttgttagattaatatttactcttttgtc |
13380474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 18148762 - 18148807
Alignment:
| Q |
133 |
ttgaatgaaaaatgttagttgttagattaatatttactcatttgtc |
178 |
Q |
| |
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|||||||| |||||||| || ||||| ||||||||||||||||||| |
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| T |
18148762 |
ttgaatgacaaatgttaattattagaataatatttactcatttgtc |
18148807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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