View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1063_low_40 (Length: 298)
Name: NF1063_low_40
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 40 - 289
Target Start/End: Original strand, 6132144 - 6132397
Alignment:
| Q |
40 |
aacaccaataaatggaacatcatcctcacaaggattgccaccagcatcatatgtattgcaaagtgtgttgcaaaaagtaaccaaaccaattgagtttctg |
139 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6132144 |
aacaccaatagatggaacatcatcctcacaaggattgccaccagcatcatatgtattgcaaagtgtgttgcaaaaagtaaccaaaccaattgagtttctg |
6132243 |
T |
|
| Q |
140 |
aacattacagctctctcagaattgagaaaagatggacatcctagttctcataatggcttccatggcatggattgtactcattggtgtgtagctggggttc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
6132244 |
aacattacagctctctcagaattgagaaaagatggacatcctagttctcataatggcttccatggcatggattgtacacattggtgtgtagctggggtac |
6132343 |
T |
|
| Q |
240 |
cagatacttggaatgagcttctgtatgcatcaatc----aataattagaattat |
289 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
6132344 |
cagatacttggaatgagcttttgtatgcatcaatcagtgaataattagaattat |
6132397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 40 - 288
Target Start/End: Original strand, 6137953 - 6138201
Alignment:
| Q |
40 |
aacaccaataaatggaacatcatcctcacaaggattgccaccagcatcatatgtattgcaaagtgtgttgcaaaaagtaaccaaaccaattgagtttctg |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| || || |||| |
|
|
| T |
6137953 |
aacaccaataaatggatcatcatcctcacttggattgccaccagcatcatatgtattgcaaaatgtgttgcagaaaataaccaaacctgttcagcttctc |
6138052 |
T |
|
| Q |
140 |
aacattacagctctctcagaattgagaaaagatggacatcctagttctcataatggcttccatggcatggattgtactcattggtgtgtagctggggttc |
239 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||| |||| || || | |
|
|
| T |
6138053 |
aacattacagctttatcagaattgagaaaagatggacatcctagtattcacaattatgcccatggaatggattgtactcattggtgtatagcaggagtcc |
6138152 |
T |
|
| Q |
240 |
cagatacttggaatgagcttctgtatgcatcaatcaataattagaatta |
288 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
6138153 |
cagatacttggaatgagattctgtatgcatcaatcacgaattagaatta |
6138201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 288
Target Start/End: Original strand, 6163040 - 6163287
Alignment:
| Q |
40 |
aacaccaataaatggaacatcatcctcacaaggattgccaccagcatcatatgtattgcaaagtgtgttgcaaaaagtaaccaaaccaattgagtttctg |
139 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || || || |||| |
|
|
| T |
6163040 |
aacaccaataaatggatcaacatcctcacttggattgccaccagcatcatatgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctc |
6163139 |
T |
|
| Q |
140 |
aacattacagctctctcagaattgagaaaagatggacatcctagttctcataatggcttccatggcatggattgtactcattggtgtgtagctggggttc |
239 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||| | ||||||||| ||||||||||| ||| |||||| | |
|
|
| T |
6163140 |
aacattacagctctatcagaattgagaaaagatggacatcctagtattcacaataatttccataggatggattgt-ctcattggtgtatagttggggtcc |
6163238 |
T |
|
| Q |
240 |
cagatacttggaatgagcttctgtatgcatcaatcaataattagaatta |
288 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| |||| |||||| |
|
|
| T |
6163239 |
cagatacttggaatgagattatgtatgcatcaatcatgaatttgaatta |
6163287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 40 - 288
Target Start/End: Original strand, 6135231 - 6135480
Alignment:
| Q |
40 |
aacaccaataaatggaacatcatcctcacaaggattgccaccagcatcatatgtattgcaaagtgtgttgcaaaaagtaaccaaaccaattgagtttctg |
139 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| || || |||| |
|
|
| T |
6135231 |
aacaccaataaatggatcatcattttcacaaggattggcaccagcatcatatgtattgcaaaatgtgttgcaaaaaataaccaaacttgttcagcttctc |
6135330 |
T |
|
| Q |
140 |
aacattacagctctctcagaattgagaaaagatggacatcctagt-tctcataatggcttccatggcatggattgtactcattggtgtgtagctggggtt |
238 |
Q |
| |
|
||| |||||||||| |||||||||| |||||||||| |||||||| | ||| ||| ||||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
6135331 |
aacgttacagctctatcagaattgataaaagatggaaatcctagtatttcacaataacttccataagatggattgtactcattggtgtatagcaggggtc |
6135430 |
T |
|
| Q |
239 |
ccagatacttggaatgagcttctgtatgcatcaatcaataattagaatta |
288 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
6135431 |
ccagatacttggaatgagattctctatgcatcaatcataaattagaatta |
6135480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 40 - 288
Target Start/End: Complemental strand, 13284461 - 13284213
Alignment:
| Q |
40 |
aacaccaataaatggaacatcatcctcacaaggattgccaccagcatcatatgtattgcaaagtgtgttgcaaaaagtaaccaaaccaattgagtttctg |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| || || |||| |
|
|
| T |
13284461 |
aacaccaataaatggatcatcatcctcacttggattgccaccagcatcatatgtattgcaaaatgtgttgcaaaaaataacaaaacctgttcagcttctc |
13284362 |
T |
|
| Q |
140 |
aacattacagctctctcagaattgagaaaagatggacatcctagttctcataatggcttccatggcatggattgtactcattggtgtgtagctggggttc |
239 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||| ||| ||| ||| || ||||||||||||||||||||| |||| || || | |
|
|
| T |
13284361 |
aacattacagctttatcagaattgagaaaagatggacatcctagtattcacaataatgcccacggaatggattgtactcattggtgtatagcaggagtcc |
13284262 |
T |
|
| Q |
240 |
cagatacttggaatgagcttctgtatgcatcaatcaataattagaatta |
288 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||| ||||| |
|
|
| T |
13284261 |
cagatacttggaatgagattctttatgcatcaatcacgaattaaaatta |
13284213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 6261070 - 6261156
Alignment:
| Q |
192 |
atggcttccatggcatggattgtac---tcattggtgtgtagctggggttccagatacttggaatgagcttctgtatgcatcaatca |
275 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| || ||||||||||||| ||||||||| || ||||||| ||||||| |
|
|
| T |
6261070 |
atggcttccatggcatggattgcacccatcattggtgtgccgcaggggttccagatagttggaatgacattttgtatgcgtcaatca |
6261156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University