View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_41 (Length: 293)
Name: NF1063_low_41
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_41 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 56038977 - 56038760
Alignment:
| Q |
4 |
cttttcttctaataattgaagaaataatttgaaaataaaacggtaactaccaaaatatataataaatcaagttgagattgatacaattcatttaattaac |
103 |
Q |
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| T |
56038977 |
cttttcttctaataattgaagaaataatttgaaaataaaacggtaagtaccaaaatatataataaatcaagttgagattgatacaattcatttaattaac |
56038878 |
T |
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| Q |
104 |
atcttattcatttgagtttgattgtgtggtagcattataatctagattaacaacgtgtttatcttgtcataggtttcttacctctcaaccaacttttatg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56038877 |
atcttattcatttgagtttgattgtgtggtagcattataatctagattaacaacgtgtttatcttgtcataggtttcttacctctcaaccaacttttatg |
56038778 |
T |
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| Q |
204 |
tcacttttgaacctcaca |
221 |
Q |
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|||||||||||||||||| |
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| T |
56038777 |
tcacttttgaacctcaca |
56038760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 18055645 - 18055605
Alignment:
| Q |
4 |
cttttcttctaataattgaagaaataatttgaaaataaaac |
44 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||| |
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| T |
18055645 |
cttttcgtctattaattgaagaaataatttgaaaataaaac |
18055605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 22683650 - 22683690
Alignment:
| Q |
4 |
cttttcttctaataattgaagaaataatttgaaaataaaac |
44 |
Q |
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| T |
22683650 |
cttttcttctattaattgaagaaataatttgaaaataaaac |
22683690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 137330 - 137385
Alignment:
| Q |
4 |
cttttcttctaataattgaagaaataatttgaaaataaaacggtaactaccaaaat |
59 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
137330 |
cttttcgtctattaattgaagaaataatttgaaaataaaacagtaagtacaaaaat |
137385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 13169658 - 13169603
Alignment:
| Q |
4 |
cttttcttctaataattgaagaaataatttgaaaataaaacggtaactaccaaaat |
59 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
13169658 |
cttttcgtctattaattgaagaaataatttgaaaataaaacagtaagtacaaaaat |
13169603 |
T |
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