View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1063_low_44 (Length: 268)
Name: NF1063_low_44
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 39449342 - 39449102
Alignment:
| Q |
16 |
tttggttctgctgtcaatttgaacactgtgcaaaaccttcaaaaagtagtagtagttcggtataagtacgtaatatgttgatgtatttggtatttgtatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39449342 |
tttggttctgctgtcaatttgaacactgtgcaaaaccttcaaaaagtagtagtagttcggtataagtacgtaatatgttgatgtatttggtatttgtatt |
39449243 |
T |
|
| Q |
116 |
gtatcggtaaatgaacaaaactgtggattgagtttttatagagtaataatag-nnnnnnnnnnngaagaaagagtaataatagttgttagtttacatatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39449242 |
gtatcggtaaatgaacaaaactgtggattgagtttttatagagtaataatagttttttttttttgaagaaagagtaataatagttgttagtttacatatt |
39449143 |
T |
|
| Q |
215 |
ccaacaggtcagcatgataattaatgaaacccttcgactct |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39449142 |
ccaacaggtcagcatgataattaatgaaacccttcgactct |
39449102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University