View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1063_low_46 (Length: 265)
Name: NF1063_low_46
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_46 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 2480188 - 2480440
Alignment:
| Q |
13 |
aatatcctcttcatgttctatcccatttttctcagcacaatcaccaacaattgtactattattaggtgctgatttttctgatgatgacacataatttgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480188 |
aatatcctcttcatgttctatcccatttttctcagcacaatcaccaacaattgtactattattaggtgctgatttttctgatgatgacacataatttgat |
2480287 |
T |
|
| Q |
113 |
tcatgactatcttcatgnnnnnnnccaagctccacccttaagatccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaat |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480288 |
tcatgactatcttcatgtttctttccaagctccacccttaagatccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaat |
2480387 |
T |
|
| Q |
213 |
tatcagcatcaagcctcaaacaagtgagtgattgagattgtttttgacaacat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480388 |
tatcagcatcaagcctcaaacaagtgagtgattgagattgtttttgacaacat |
2480440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 49532904 - 49532812
Alignment:
| Q |
157 |
ccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaagtgagtgattgaga |
249 |
Q |
| |
|
||||||||| |||||||||| ||| |||| ||||||||| ||||| ||||||||||||||| ||| |||||||||||||| |||||| |||| |
|
|
| T |
49532904 |
ccaattagaatcagaatgtggtccagctcttttttgccacactccaatgtgagaattatcattatctagcctcaaacaagtaagtgatggaga |
49532812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 44648467 - 44648531
Alignment:
| Q |
179 |
cctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaagtgagtga |
243 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||||| |||||||||||| |
|
|
| T |
44648467 |
cctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtga |
44648531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University