View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1063_low_5 (Length: 674)
Name: NF1063_low_5
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Original strand, 50140542 - 50141169
Alignment:
| Q |
17 |
tgaaatataattacaattatatgattaaactattagatggtgacctatcacgttttatttttnnnnnnnnnnntggagtaaaaggtcattttgatttgtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50140542 |
tgaaatataattacaattatatgattaaactattagatggtgacctatcacgttttatttttaaaaaaaaa--tggagtaaaaggtcattttgatttgtg |
50140639 |
T |
|
| Q |
117 |
agtttgtgattcttttttgaatgaaaaatgttagttgttagattaatatttactcatttgtcggatttaaatttaagatcttcaacttcttatcgtttaa |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
50140640 |
agtttgtgattcttttttgaatgataaatgtttgttgttagattaatatttcctcatttgtcgggtttaaatttaagatctccaacttcttatcgtttaa |
50140739 |
T |
|
| Q |
217 |
ctcacatcagtttagctacccaacccc-aattgcgagtgtgtgatgttgtcactctaattgcaaataccttcttagagcctcttatgttataatattttt |
315 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50140740 |
ctcacatcaatttagctacccaacccccaattgcgagtgtgtgatgttgtcactctaattgcaaataccttcttagagcctcttatgttataatattttt |
50140839 |
T |
|
| Q |
316 |
caattaaatcaactaacgaagaacacatttgaagattaaattaacaacttaaaaacatatatgtagactaaaatgactaatcaaatatatatttgaagat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
50140840 |
caattaaatcaactaacgaagaacacatttgaagattaaattaacaatttaaaaacatatatgtagactaaaatgactaatcaaatatatatttaaaaat |
50140939 |
T |
|
| Q |
416 |
gtgtttacaattttgatatatccgtgaactatagcaaactcgtctcacacattcatagatcaatatggttggttnnnnnnnnnnggcatttattctataa |
515 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
50140940 |
gtgtttacaattttgatacatccgtgaactatagcaaactcgtctcacacattcatagatcaatatggttggtt-aaaaaaaaagtcatttattctataa |
50141038 |
T |
|
| Q |
516 |
ctctaatcgaagaagtatgaattaacaattacacacacgtacacgtccttggtatctaactttggttagacaagacaaattcaatgctctaatcaaatat |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
50141039 |
ctctaatcgaagaagtatgaattaacaattacacacacgtacacgtccttggtatctaactttggttagacaagacaaatttaatgctctaatcaaatat |
50141138 |
T |
|
| Q |
616 |
gctttctttgatgctattttgccatctcttt |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
50141139 |
gctttctttgatgctattttgccatctcttt |
50141169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 44751944 - 44751978
Alignment:
| Q |
144 |
atgttagttgttagattaatatttactcatttgtc |
178 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
44751944 |
atgttagtggttagattaatatttactcatttgtc |
44751978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 17080025 - 17079986
Alignment:
| Q |
146 |
gttagttgttagattaatatttactcatttgtcggattta |
185 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
17080025 |
gttagttgttacattaatatttactcatttgtcgggttta |
17079986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 9834623 - 9834665
Alignment:
| Q |
129 |
ttttttgaatgaaaaatgttagttgttagattaatatttactc |
171 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
9834623 |
ttttttgaatgacatatgttagttgttaggttaatatttactc |
9834665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 12020170 - 12020125
Alignment:
| Q |
129 |
ttttttgaatgaaaaatgttagttgttagattaatatttactcatt |
174 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
12020170 |
ttttttgaatggcaaatgttaatagttagattaatatttactcatt |
12020125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 13380506 - 13380474
Alignment:
| Q |
146 |
gttagttgttagattaatatttactcatttgtc |
178 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
13380506 |
gttagttgttagattaatatttactcttttgtc |
13380474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 18148762 - 18148807
Alignment:
| Q |
133 |
ttgaatgaaaaatgttagttgttagattaatatttactcatttgtc |
178 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
18148762 |
ttgaatgacaaatgttaattattagaataatatttactcatttgtc |
18148807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University