View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_low_54 (Length: 217)

Name: NF1063_low_54
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_low_54
NF1063_low_54
[»] chr5 (3 HSPs)
chr5 (56-140)||(1206803-1206889)
chr5 (143-190)||(13358439-13358486)
chr5 (149-203)||(30249354-30249408)
[»] scaffold0301 (1 HSPs)
scaffold0301 (141-202)||(8949-9010)
[»] chr6 (4 HSPs)
chr6 (141-204)||(18909125-18909188)
chr6 (139-203)||(22232579-22232643)
chr6 (141-203)||(3917570-3917632)
chr6 (141-186)||(14779974-14780019)
[»] chr3 (4 HSPs)
chr3 (140-203)||(35491055-35491118)
chr3 (141-204)||(17218096-17218159)
chr3 (151-190)||(37468058-37468097)
chr3 (141-181)||(44363482-44363522)
[»] chr7 (5 HSPs)
chr7 (141-203)||(44413284-44413346)
chr7 (140-204)||(43005639-43005703)
chr7 (140-203)||(18157299-18157362)
chr7 (141-203)||(46462067-46462129)
chr7 (141-192)||(23443600-23443651)
[»] chr4 (1 HSPs)
chr4 (140-203)||(8657547-8657610)
[»] chr2 (6 HSPs)
chr2 (141-203)||(24690113-24690175)
chr2 (141-203)||(24699464-24699526)
chr2 (140-204)||(18973130-18973194)
chr2 (140-190)||(40387037-40387087)
chr2 (141-181)||(17333892-17333932)
chr2 (151-203)||(19884407-19884459)
[»] chr1 (3 HSPs)
chr1 (141-203)||(51967950-51968012)
chr1 (141-203)||(15473850-15473912)
chr1 (140-184)||(44910963-44911007)
[»] scaffold1699 (1 HSPs)
scaffold1699 (141-203)||(1368-1430)
[»] scaffold0119 (1 HSPs)
scaffold0119 (141-202)||(40175-40236)
[»] scaffold0043 (1 HSPs)
scaffold0043 (143-203)||(33213-33273)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 1206803 - 1206889
Alignment:
Q  56 aacccatctttatgtgctaacaacact--gagagaaaggtagagatgagaagttgttactttgctgagaaaaatagggtttgctggc 140  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1206803 aacccatctttatgtgctaacaatatttggagagaaaggtagagatgagaagttgttactctgctgagaaaaatagggtttgctggc 1206889  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 13358439 - 13358486
Alignment:
Q  143 tcatatcccaatttttgacttaagaacctacattcatacaccctctga 190  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13358439 tcatatcccaatttttgacctaagaccctacattcatacaccctctga 13358486  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 30249354 - 30249408
Alignment:
Q  149 cccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||||||||| || ||||||||||||||||||| |||||| |||||||||||    
T  30249354 cccaatttttgacctaggaacctacattcatacaccgtctgactcagaatattct 30249408  T

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Target: scaffold0301 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 8949 - 9010
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattc 202  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8949 tgtcatatcctaatttttgacttaagaacctacattcatacaccctctgacccataatattc 9010  T

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Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 18909125 - 18909188
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattctt 204  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  18909125 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccaaaatattctt 18909188  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 22232643 - 22232579
Alignment:
Q  139 gctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||||| |||||||||| || |||||||||||||||||||||||||||||||| ||||||||    
T  22232643 gctgtcataccccaatttttaacctaagaacctacattcatacaccctctgacccataatattct 22232579  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 3917632 - 3917570
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||| |||||||||| || |||||||||||||||||||||||||| ||||| ||||||||    
T  3917632 tgtcataccccaatttttaacctaagaacctacattcatacaccctctaacccataatattct 3917570  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 14780019 - 14779974
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccct 186  Q
    |||||||  |||||||||||| |||| |||||||||||||||||||    
T  14780019 tgtcatacaccaatttttgacctaaggacctacattcatacaccct 14779974  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 35491055 - 35491118
Alignment:
Q  140 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  35491055 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacctagaatattct 35491118  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 17218159 - 17218096
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattctt 204  Q
    ||||||| ||||||||||||| ||| | ||||||||||||| || |||||||| ||||| ||||    
T  17218159 tgtcataccccaatttttgacctaacaccctacattcatacgccgtctgaccctgaatagtctt 17218096  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 37468058 - 37468097
Alignment:
Q  151 caatttttgacttaagaacctacattcatacaccctctga 190  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  37468058 caatttttgacttaagaacttatattcatacaccctctga 37468097  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 44363522 - 44363482
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatac 181  Q
    ||||||| || |||||||||||||||| |||||||||||||    
T  44363522 tgtcataccctaatttttgacttaagatcctacattcatac 44363482  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 44413346 - 44413284
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  44413346 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattct 44413284  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 43005703 - 43005639
Alignment:
Q  140 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattctt 204  Q
    |||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  43005703 ctgtcataccccaattttttacctaagaacctacattcatacaccctctgacccaaaatattctt 43005639  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 18157362 - 18157299
Alignment:
Q  140 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  18157362 ctgtcataccccagtttttgacctaagaacctacattcatacaccctctgacccataatattct 18157299  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 46462129 - 46462067
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||| |||||||||| || |||||||||| ||||||||||||| ||||| | ||||||||    
T  46462129 tgtcataccccaattttttacctaagaacctagattcatacaccctttgacctataatattct 46462067  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 23443600 - 23443651
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacc 192  Q
    ||||||| ||||||||||||| ||||| ||||||||||||| |||| |||||    
T  23443600 tgtcataccccaatttttgacctaagaccctacattcatacgccctttgacc 23443651  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 8657547 - 8657610
Alignment:
Q  140 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  8657547 ctgtcataccccaatttttgacctaagaacctacattcatacaccctttgacccataatattct 8657610  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 24690113 - 24690175
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  24690113 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaacccataatattct 24690175  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 24699464 - 24699526
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  24699464 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaacccataatattct 24699526  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 18973194 - 18973130
Alignment:
Q  140 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattctt 204  Q
    |||||||| |||||||||||||  ||||| ||||||||||||||| ||||||||| |||||||||    
T  18973194 ctgtcataccccaatttttgaccaaagaatctacattcatacaccatctgacccataatattctt 18973130  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 40387087 - 40387037
Alignment:
Q  140 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctga 190  Q
    |||||||| |||||||||| || ||||| |||||||| |||||||||||||    
T  40387087 ctgtcataccccaattttttacctaagaccctacatttatacaccctctga 40387037  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 17333932 - 17333892
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatac 181  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  17333932 tgtcataccccaatttttgacctaagaccctacattcatac 17333892  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 19884459 - 19884407
Alignment:
Q  151 caatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||||||| ||| ||| |||||||||||||||| ||| ||| ||||||||    
T  19884459 caatttttgacctaaaaacttacattcatacaccctatgatccaaaatattct 19884407  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 51967950 - 51968012
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||| |||||||||| || |||||||||||||||||||||||||||||||| ||||||||    
T  51967950 tgtcataccccaattttttacctaagaacctacattcatacaccctctgacccataatattct 51968012  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 15473912 - 15473850
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||| ||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||    
T  15473912 tgtcataccccaatttttgacctaagagcatacattcatacaccctctgacccataatattct 15473850  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 44911007 - 44910963
Alignment:
Q  140 ctgtcatatcccaatttttgacttaagaacctacattcatacacc 184  Q
    ||||||||| ||||||||| || |||||||| |||||||||||||    
T  44911007 ctgtcatattccaattttttacctaagaacccacattcatacacc 44910963  T

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Target: scaffold1699 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 1430 - 1368
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||||| |||||||||| || |||||||||||||||||||||||||| ||||| ||||||||    
T  1430 tgtcataccccaattttttacctaagaacctacattcatacaccctctaacccataatattct 1368  T

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Target: scaffold0119 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 40236 - 40175
Alignment:
Q  141 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattc 202  Q
    |||||||  |||||||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  40236 tgtcatactccaatttttgacctaagaacctacattcatacaccctttgatccagaatattc 40175  T

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Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 33273 - 33213
Alignment:
Q  143 tcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaatattct 203  Q
    ||||| ||||| || |||| |||||||||||||||||||||||||||||||| ||||||||    
T  33273 tcataccccaacttatgacctaagaacctacattcatacaccctctgacccataatattct 33213  T

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