View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_low_58 (Length: 209)

Name: NF1063_low_58
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_low_58
NF1063_low_58
[»] chr5 (3 HSPs)
chr5 (96-180)||(1206803-1206889)
chr5 (33-93)||(13358439-13358499)
chr5 (35-87)||(30249354-30249406)
[»] scaffold0301 (1 HSPs)
scaffold0301 (35-95)||(8949-9009)
[»] chr3 (4 HSPs)
chr3 (35-96)||(35491055-35491116)
chr3 (46-85)||(37468058-37468097)
chr3 (37-95)||(17218101-17218159)
chr3 (55-95)||(44363482-44363522)
[»] chr7 (5 HSPs)
chr7 (35-95)||(44413286-44413346)
chr7 (35-96)||(18157301-18157362)
chr7 (35-96)||(43005642-43005703)
chr7 (35-95)||(46462069-46462129)
chr7 (44-95)||(23443600-23443651)
[»] chr6 (4 HSPs)
chr6 (35-95)||(18909125-18909185)
chr6 (35-97)||(22232581-22232643)
chr6 (35-95)||(3917572-3917632)
chr6 (50-95)||(14779974-14780019)
[»] chr4 (1 HSPs)
chr4 (35-96)||(8657547-8657608)
[»] chr2 (5 HSPs)
chr2 (35-95)||(24690113-24690173)
chr2 (35-95)||(24699464-24699524)
chr2 (35-96)||(18973133-18973194)
chr2 (28-96)||(40387019-40387087)
chr2 (55-95)||(17333892-17333932)
[»] chr1 (3 HSPs)
chr1 (35-95)||(51967950-51968010)
chr1 (35-95)||(15473852-15473912)
chr1 (52-96)||(44910963-44911007)
[»] scaffold1699 (1 HSPs)
scaffold1699 (35-95)||(1370-1430)
[»] scaffold0119 (1 HSPs)
scaffold0119 (35-95)||(40176-40236)
[»] scaffold0043 (1 HSPs)
scaffold0043 (35-93)||(33215-33273)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 1206889 - 1206803
Alignment:
Q  96 gccagcaaaccctatttttctcagcaaagtaacaacttctcatctctacctttctctc--agtgttgttagcacataaagatgggtt 180  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||    
T  1206889 gccagcaaaccctatttttctcagcagagtaacaacttctcatctctacctttctctccaaatattgttagcacataaagatgggtt 1206803  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 13358499 - 13358439
Alignment:
Q  33 ataatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatga 93  Q
    ||||||||| |  |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  13358499 ataatattccgtatcagagggtgtatgaatgtagggtcttaggtcaaaaattgggatatga 13358439  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 30249406 - 30249354
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattggg 87  Q
    ||||||||| |||||| ||||||||||||||||||| || |||||||||||||    
T  30249406 aatattctgagtcagacggtgtatgaatgtaggttcctaggtcaaaaattggg 30249354  T

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Target: scaffold0301 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 9009 - 8949
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9009 aatattatgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattaggatatgaca 8949  T

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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 35491116 - 35491055
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 96  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  35491116 aatattctaggtcagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgacag 35491055  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 37468097 - 37468058
Alignment:
Q  46 tcagagggtgtatgaatgtaggttcttaagtcaaaaattg 85  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  37468097 tcagagggtgtatgaatataagttcttaagtcaaaaattg 37468058  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 17218101 - 17218159
Alignment:
Q  37 tattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    ||||| |||||||| || ||||||||||||| | ||| ||||||||||||| |||||||    
T  17218101 tattcagggtcagacggcgtatgaatgtagggtgttaggtcaaaaattggggtatgaca 17218159  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 44363482 - 44363522
Alignment:
Q  55 gtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    ||||||||||||| |||||||||||||||| || |||||||    
T  44363482 gtatgaatgtaggatcttaagtcaaaaattagggtatgaca 44363522  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 44413286 - 44413346
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  44413286 aatattatgggtcagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgaca 44413346  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 18157301 - 18157362
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 96  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  18157301 aatattatgggtcagagggtgtatgaatgtaggttcttaggtcaaaaactggggtatgacag 18157362  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 43005642 - 43005703
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 96  Q
    |||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||    
T  43005642 aatattttgggtcagagggtgtatgaatgtaggttcttaggtaaaaaattggggtatgacag 43005703  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 46462069 - 46462129
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| | ||||| ||||||||||||| |||||||||| || |||||||||| |||||||    
T  46462069 aatattataggtcaaagggtgtatgaatctaggttcttaggtaaaaaattggggtatgaca 46462129  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 23443651 - 23443600
Alignment:
Q  44 ggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    ||||| |||| ||||||||||||| ||||| ||||||||||||| |||||||    
T  23443651 ggtcaaagggcgtatgaatgtagggtcttaggtcaaaaattggggtatgaca 23443600  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 18909185 - 18909125
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  18909185 aatattttgggtcagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgaca 18909125  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 22232581 - 22232643
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacagc 97  Q
    |||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||||    
T  22232581 aatattatgggtcagagggtgtatgaatgtaggttcttaggttaaaaattggggtatgacagc 22232643  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 3917572 - 3917632
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| ||||| |||||||||||||||||||||||||| || |||||||||| |||||||    
T  3917572 aatattatgggttagagggtgtatgaatgtaggttcttaggttaaaaattggggtatgaca 3917632  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 14779974 - 14780019
Alignment:
Q  50 agggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    ||||||||||||||||||| |||| ||||||||||||  |||||||    
T  14779974 agggtgtatgaatgtaggtccttaggtcaaaaattggtgtatgaca 14780019  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 8657608 - 8657547
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 96  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  8657608 aatattatgggtcaaagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgacag 8657547  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 24690173 - 24690113
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  24690173 aatattatgggttagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgaca 24690113  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 24699524 - 24699464
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  24699524 aatattatgggttagagggtgtatgaatgtaggttcttaggtcaaaaattggggtatgaca 24699464  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 18973133 - 18973194
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 96  Q
    |||||| ||||||||| ||||||||||||||| |||||  ||||||||||||| ||||||||    
T  18973133 aatattatgggtcagatggtgtatgaatgtagattctttggtcaaaaattggggtatgacag 18973194  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 40387019 - 40387087
Alignment:
Q  28 gtcgaataatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 96  Q
    |||| |||||||||  | ||||||||||||| |||||||| ||||| || |||||||||| ||||||||    
T  40387019 gtcggataatattccagatcagagggtgtataaatgtagggtcttaggtaaaaaattggggtatgacag 40387087  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 17333892 - 17333932
Alignment:
Q  55 gtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    ||||||||||||| ||||| ||||||||||||| |||||||    
T  17333892 gtatgaatgtagggtcttaggtcaaaaattggggtatgaca 17333932  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 51968010 - 51967950
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||    
T  51968010 aatattatgggtcagagggtgtatgaatgtaggttcttaggtaaaaaattggggtatgaca 51967950  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 15473852 - 15473912
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| |||||||||||||||||||||||| | ||||| ||||||||||||| |||||||    
T  15473852 aatattatgggtcagagggtgtatgaatgtatgctcttaggtcaaaaattggggtatgaca 15473912  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 44910963 - 44911007
Alignment:
Q  52 ggtgtatgaatgtaggttcttaagtcaaaaattgggatatgacag 96  Q
    ||||||||||||| |||||||| || ||||||||| |||||||||    
T  44910963 ggtgtatgaatgtgggttcttaggtaaaaaattggaatatgacag 44911007  T

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Target: scaffold1699 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 1370 - 1430
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||| ||||| |||||||||||||||||||||||||| || |||||||||| |||||||    
T  1370 aatattatgggttagagggtgtatgaatgtaggttcttaggtaaaaaattggggtatgaca 1430  T

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Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 40176 - 40236
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatgaca 95  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||||||||||  |||||||    
T  40176 aatattctggatcaaagggtgtatgaatgtaggttcttaggtcaaaaattggagtatgaca 40236  T

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Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 33215 - 33273
Alignment:
Q  35 aatattctgggtcagagggtgtatgaatgtaggttcttaagtcaaaaattgggatatga 93  Q
    |||||| |||||||||||||||||||||||||||||||| |||| || ||||| |||||    
T  33215 aatattatgggtcagagggtgtatgaatgtaggttcttaggtcataagttggggtatga 33273  T

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