View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1063_low_6 (Length: 662)
Name: NF1063_low_6
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 29 - 647
Target Start/End: Complemental strand, 8528028 - 8527414
Alignment:
| Q |
29 |
agagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattctgacccttgcttattacaattttaggtatgttacttagactttgttatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528028 |
agagcctgcttcctaagaagagtacgtctgctttcgtattgattggtattctgacccctgcttattacaattttaggtatgttacttagactttgttatg |
8527929 |
T |
|
| Q |
129 |
taatattggtgttattttatataggtgtgcaaatattaaattgcatgaagaaaatgaagatcttgaatgatgttttgacttcttcctccggtggtgaggc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8527928 |
taatattggtgttattttatataggtgtgcaaatattaaattgcatgaagaagatgaagatcttgaatgatgttttgacttcttcctccggtggtgaggc |
8527829 |
T |
|
| Q |
229 |
ttttggtgaagagtacagctgataagaaggaatttccatacactaggcatggttatgttaaatcacaagttatgatttggctagttgtgattttgnnnnn |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8527828 |
ttttggtgaagagtacagctgataagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgtgattttg--aaa |
8527731 |
T |
|
| Q |
329 |
nnnnnntacaaatctcattttaagatgcaaatgatgtcnnnnnnnnngtaaaatttaatctagatgttcattaatcattatctgtgctttaaggaggctg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8527730 |
aaaaactacaaatctcattttaagatgcaaatgatgtc--tttttttgtaaaatttaatctagatgttcattaatcattatctgtgctttaaggaggctg |
8527633 |
T |
|
| Q |
429 |
gcttggtttagaaaaagtcagattattgctcagctatttcattctgtttcctgatctcctatgtgtttttctttatcaatctggatttcctagattccta |
528 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
8527632 |
gcttggtttagaaaaagtctgattattactcggctatttcattctgtttcctgatctcctatgtgcttttcttcatcaatctggatttcctagattccta |
8527533 |
T |
|
| Q |
529 |
gtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatttaaaat |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8527532 |
gtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcgatgaatcgattagatttaaaat |
8527433 |
T |
|
| Q |
629 |
ttaatgattgaatttcaat |
647 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8527432 |
ttaatgattgaatttcaat |
8527414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 378 - 647
Target Start/End: Complemental strand, 8534274 - 8534005
Alignment:
| Q |
378 |
aaaatttaatctagatgttcattaatcattatctgtgctttaaggaggctggcttggtttagaaaaagtcagattattgctcagctatttcattctgttt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
8534274 |
aaaatttaatctagatgttcattaatcattatctatgctttaacgaggctgtcttgatttagaaaaagactgattattgctcagctatttcattctgttt |
8534175 |
T |
|
| Q |
478 |
cctgatctcctatgtgtttttctttatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttctgaatccctaaacctgaatt |
577 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8534174 |
cctgatctcctatgtgtttttcttcatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttctgaatccctaagcctgaatt |
8534075 |
T |
|
| Q |
578 |
ataatgaattatctatttgagtagcttcaatgaatcgattagatttaaaatttaatgattgaatttcaat |
647 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8534074 |
ataatgaattatctatttgagtagctttgatgaattgattagatttaaaatttaatgattgaatttcaat |
8534005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 33 - 193
Target Start/End: Complemental strand, 8534600 - 8534438
Alignment:
| Q |
33 |
cctgcttcctaagaagagtacgtctgctttcgtattgatttgtattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaat |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
8534600 |
cctgcttcctaagaagagtacgtctgctttcgtattgattgttattctgacccttgcttattacaattttaggtatgttacttagacttcgtcatgtaat |
8534501 |
T |
|
| Q |
133 |
attggtgttattttatataggtgtgcaaa--tattaaattgcatgaagaaaatgaagatcttg |
193 |
Q |
| |
|
|||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
8534500 |
attggtgttattttatataggtgttcaaattttttaatttgcatgaagaaaatgaagatcttg |
8534438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 230 - 604
Target Start/End: Original strand, 1601230 - 1601615
Alignment:
| Q |
230 |
tttggtgaagagtacagctgataagaaggaatttccatacactaggcatggttatgttaaatcacaagttatgatttggctagttgtgattttgnnnnnn |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1601230 |
tttggtgaagagtacagctgataagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgcgatttt--tgaaa |
1601327 |
T |
|
| Q |
330 |
nnnnntacaaatctcattttaagatgcaaatgatgtcnnnnnnnnngtaaaatttaatctagatgttcattaatcattatctgtgctttaag------ga |
423 |
Q |
| |
|
| ||||||| || || ||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||| |||| | |
|
|
| T |
1601328 |
aaaaattcaaatctggttctaggatgcaaatgatgtcttttt----gtaaactttaatctagatgttcactaatcattatctatgctgtaagactggcca |
1601423 |
T |
|
| Q |
424 |
g-------gctggcttggtttagaaaa--agtcagattattgctcagctatttcattctgtttcctgatctcc--tatgtgtttttctttatcaatctgg |
512 |
Q |
| |
|
| | |||| |||||||||||| | | | |||||||| |||||||| ||||||||| ||||||| |||||||||| ||| ||||||| | |
|
|
| T |
1601424 |
gttatcttgttggcctggtttagaaaatgattgactatattgctcggctatttcgttctgtttctcgatctcctatatgtgttttacttcatcaatcctg |
1601523 |
T |
|
| Q |
513 |
atttcctagattcctagtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagctt |
604 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||| ||||| |
|
|
| T |
1601524 |
atttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgaggagctt |
1601615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 8640606 - 8640449
Alignment:
| Q |
42 |
taagaagagtacgtctgctttcgtattgatttgtattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgtt |
141 |
Q |
| |
|
|||||||||||||| | ||| | ||||||||||||| |||||| |||||| |||||||||||| | ||||||||||||||||| ||| ||||||||| |
|
|
| T |
8640606 |
taagaagagtacgtttatttttgcattgatttgtattttgacccctgcttactacaattttaggcacgttacttagactttgtttcgtaccattggtgtt |
8640507 |
T |
|
| Q |
142 |
attttatataggtgtgcaaatattaaattgcatgaagaaaatgaagatcttgaatgat |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8640506 |
attttatataggtgtgcaaaatttaaattgcgtgaagaaaatgaagatcttgaatgat |
8640449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 452 - 647
Target Start/End: Original strand, 8545473 - 8545671
Alignment:
| Q |
452 |
tattgctcagctatttcattctgtttcctgatctcctat--gtgtttttctttatcaatctggatttcctagattcctagtcattaactgctccttgaaa |
549 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||| |||||||| |||| | ||| ||||||||||||||||| |
|
|
| T |
8545473 |
tattgctcagctatttcattctgtttcccgatctcctatatgtgttttacttcatcaatcctgatttcctttattcttcgtctttaactgctccttgaaa |
8545572 |
T |
|
| Q |
550 |
agggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatttaaa-atttaatgattgaatttcaat |
647 |
Q |
| |
|
|| ||||||| |||||| | | | |||||||||||||||| ||||||| ||||| |||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
8545573 |
agagtttctgcatccctgagcgttaattataatgaattattgatttgaggagctttgatgaatagtttagatttaaatttttaatgattgaatttcaat |
8545671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 9075303 - 9075444
Alignment:
| Q |
106 |
tatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaaatattaaattgcatgaagaaaatgaagatcttgaatgatgttttg |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
9075303 |
tatgttacttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaaattgcatgaagagaatgaagatcttgaatgatgtctta |
9075402 |
T |
|
| Q |
206 |
a-------cttcttcctccggtggtgaggcttttggtgaaga |
240 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
9075403 |
acaaatatcttcttcctccagtggtgaggcttttggtgaaga |
9075444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 8643630 - 8643506
Alignment:
| Q |
75 |
tattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaaatattaaattgcat |
174 |
Q |
| |
|
||||||||||||||| || |||||||||||| | |||||||| || | || |||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
8643630 |
tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatat |
8643532 |
T |
|
| Q |
175 |
gaagaaaatgaagatcttgaatgatg |
200 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
8643531 |
gaaaaaaatgaagatcttgaatgatg |
8643506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 8636206 - 8636090
Alignment:
| Q |
82 |
acccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaaatattaaattgcatgaagaaa |
181 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| || || ||||| |||||||||| |||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
8636206 |
acccttgcttaatacaattttaggtacattactaaggctctgttacgtaatattggcgttattttatataggtatgcaaattttaaattaagtgaagaaa |
8636107 |
T |
|
| Q |
182 |
atgaagatcttgaatga |
198 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8636106 |
atgaagatcttgaatga |
8636090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 9002356 - 9002283
Alignment:
| Q |
125 |
tatgtaatattggtgttattttatataggtgtgcaaatattaaattgcatgaagaaaatgaagatcttgaatga |
198 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9002356 |
tatgtaatattggtgttgttttgtataggtgtgcaaagtttaaattgcgtgaagaaaatgaagatcttgaatga |
9002283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 8549058 - 8549145
Alignment:
| Q |
114 |
ttagactttgttatgtaatattggtgttattttatataggtgtgcaaa-tattaaattgcatgaagaaaatgaagatcttgaatgatg |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| ||||||| | | ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
8549058 |
ttagcctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg |
8549145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 15618576 - 15618505
Alignment:
| Q |
245 |
agctgataagaaggaatttccatacactaggcatggttatgttaaatcacaagttatgatttggctagttgt |
316 |
Q |
| |
|
|||| ||||||| |||||| |||||||||| || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15618576 |
agctaataagaaagaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagttgt |
15618505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 8677415 - 8677342
Alignment:
| Q |
75 |
tattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttat |
148 |
Q |
| |
|
|||||||| || | |||| |||||||||||| ||||||||| | || |||| |||||||||||||||||||||| |
|
|
| T |
8677415 |
tattctgatccgtccttactacaattttaggaatgttacttgggctctgttttgtaatattggtgttattttat |
8677342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 8534412 - 8534365
Alignment:
| Q |
217 |
cggtggtgaggcttttggtgaagagtacagctgataagaaggaatttc |
264 |
Q |
| |
|
||||| ||| ||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
8534412 |
cggtgctgacgcttttggtgaagagtacaactgattagaaggaatttc |
8534365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 9442195 - 9441937
Alignment:
| Q |
29 |
agagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattctgacccttgcttattacaattttaggtatgttacttagactttgttatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442195 |
agagcctgcttcctaagaagagtacgtctgctttcgtattgattggtattctgacccttgcttattacaattttaggtatgttacttagactttgttatg |
9442096 |
T |
|
| Q |
129 |
taatattggtgttattttatataggtgtgcaaatattaaattgcatgaagaaaatgaagatcttgaatgatgttttgacttcttcctccggtggtgaggc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442095 |
taatattggtgttattttatataggtgtgcaaatattaaattacatgaagaaaatgaagatcttgaatgatgttttgacttcttcctccggtggtgaggc |
9441996 |
T |
|
| Q |
229 |
ttttggtgaagagtacagctgataagaaggaatttccatacactaggcatggttatgtt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9441995 |
ttttggtgaagagtacagctgataagaaggaatttccatacactaggcagggttatgtt |
9441937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 458 - 643
Target Start/End: Complemental strand, 9441937 - 9441752
Alignment:
| Q |
458 |
tcagctatttcattctgtttcctgatctcctatgtgtttttctttatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttc |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441937 |
tcagctatttcattctgtttcctgatctcctatgtgcttttcttcatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttc |
9441838 |
T |
|
| Q |
558 |
tgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatttaaaatttaatgattgaattt |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441837 |
tgaatccctaaacctgaattataatgaattatctatttgagtagcttcgatgaatcgattagatttaaaatttaatgattgaattt |
9441752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 7e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 37 - 322
Target Start/End: Original strand, 48362667 - 48362959
Alignment:
| Q |
37 |
cttcctaagaagagtacgtctgctttcg-tattgatttgtattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatatt |
135 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||| || ||||||||| ||| |||||||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
48362667 |
cttcctaagaagagtacgtctgttttcgcttttgattggttttctgacccctgcgtattacaattttagttatgttactaagactatgttatgtaatatt |
48362766 |
T |
|
| Q |
136 |
ggtgttattttatataggtgtgcaaatattaaattgcatgaagaaaatgaagatcttgaatgatgttttga-------cttcttcctccggtggtgaggc |
228 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
48362767 |
cgtgttattt-atataggtgtgcaaatattaaattacatgaagaaaatgaagatctcgaatgatggtttgacaaataccttcttcctccggtggtgaggc |
48362865 |
T |
|
| Q |
229 |
ttttggtgaagagtacagctgataagaaggaatttccatacactaggcatggttatgttaaatcacaagttatgatttggctagttgtgatttt |
322 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48362866 |
ctttggtgaagagtacaactgataagagggaatttccatacactgggcagggttatgttaaatcacaagttatgatttggctagttgtgatttt |
48362959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 427 - 647
Target Start/End: Original strand, 48363068 - 48363291
Alignment:
| Q |
427 |
tggcttggtttagaaaaagtcagattattgctcagctatttcattctgtttcctgatctccta--tgtgtttttctttatcaatctggatttcctagatt |
524 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||| ||| ||||||| | |||||| |||| |
|
|
| T |
48363068 |
tggctgggtttagaaaaagattgattattgctcagctatttcattctgtttctcgacctcctagatgtgttttacttcatcaatcctgctttccttgatt |
48363167 |
T |
|
| Q |
525 |
cctagtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagattta |
624 |
Q |
| |
|
| || || |||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||| ||||||| ||||| |||||| | ||||||||| |
|
|
| T |
48363168 |
cttaatctttaactgctccttgaaaagggtttctgaatccctaaacgttaatcataatgagttatcaatttgaggagctttgatgaatagtttagattta |
48363267 |
T |
|
| Q |
625 |
aa-atttaatgattgaatttcaat |
647 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
48363268 |
aatttttaatgattgaatttcaat |
48363291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 305
Target Start/End: Complemental strand, 35777444 - 35777257
Alignment:
| Q |
127 |
tgtaatattggtgttattttatataggtgtgcaaa-tattaaattgcatgaagaaaatgaagatcttgaatgatgttttgact-------tct-tcctcc |
217 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| | ||||| |||| ||| ||||||||||||||||||||| ||||| ||| |||| | |
|
|
| T |
35777444 |
tgtaatattggtgttattttgtatagtcgtgcaaagttttaaactgcagtaagtaaatgaagatcttgaatgatgacttgacaagtatcctctctccttc |
35777345 |
T |
|
| Q |
218 |
ggtggtgaggcttttggtgaagagtacagctgataagaaggaatttccatacactaggcatggttatgttaaatcacaagttatgatt |
305 |
Q |
| |
|
|||||||| |||||||| |||||||||| || || |||| |||||||||||| ||||||||| |||| |||||||||| |||||||| |
|
|
| T |
35777344 |
ggtggtgacgcttttggcgaagagtacaactattatgaagtaatttccatacagtaggcatggctatgctaaatcacaatttatgatt |
35777257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 48362528 - 48362584
Alignment:
| Q |
130 |
aatattggtgttattttatataggtgtgcaaatattaaattgcatgaagaaaatgaag |
187 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
48362528 |
aatattggt-ttaatttatataggtgtgcaaagtttaaattgcaggaagaaaaggaag |
48362584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 6e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 26324463 - 26324584
Alignment:
| Q |
29 |
agagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattctgacccttgcttattacaattttaggtatgtt-acttagactttgttat |
127 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26324463 |
agagccggcttccaaagaagagtacgtctgttttcgtattgattggtattctgacccttgcttattacaattttaggtatgttaacttagactttgttat |
26324562 |
T |
|
| Q |
128 |
gtaatattggtgttattttata |
149 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26324563 |
gtaatattggtgttattttata |
26324584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 541 - 626
Target Start/End: Original strand, 26325082 - 26325167
Alignment:
| Q |
541 |
tccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatttaaa |
626 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
26325082 |
tccttgaaaagggtttctgaatccctaagcctgaattataatgatttatctatttgagtagcttcgatgaattgattagatttaaa |
26325167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 5129920 - 5129794
Alignment:
| Q |
66 |
attgatttgtattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaaatatt |
165 |
Q |
| |
|
||||||| |||||||||| | |||||| |||||||||||| | ||| |||| | |||||| ||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
5129920 |
attgattggtattctgactcctgcttagtacaattttaggcacattatttaggccttgttacgtaatattggtcttattttatataggtgtgcaaatttt |
5129821 |
T |
|
| Q |
166 |
aaattgcatgaagaaaatgaagatctt |
192 |
Q |
| |
|
|| ||| ||| ||||||||||||| |
|
|
| T |
5129820 |
aatctgcgagaaagaaatgaagatctt |
5129794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 141 - 270
Target Start/End: Original strand, 26324948 - 26325080
Alignment:
| Q |
141 |
tattttatataggtgtgcaaatattaaattgcatgaagaaaatgaagatcttgaatgatgttttgac-------ttcttcctccggtggtgaggcttttg |
233 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||||||||||||||||| ||| | ||| || || ||| ||||||||||||||| |
|
|
| T |
26324948 |
tattttatataggtgtgcaaaattgaatttgcatgaagaaaatgaagatcttga----tgtatagacaaatacctttgtcgtcctgtggtgaggcttttg |
26325043 |
T |
|
| Q |
234 |
gtgaagagtacagctgataagaaggaatttccataca |
270 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
26325044 |
gtgaagagtacaactgattagaaggaatttccataca |
26325080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 44438409 - 44438462
Alignment:
| Q |
60 |
tttcgtattgatttgtattctgacccttgcttattacaattttaggtatgttac |
113 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
44438409 |
tttcgcattgatcggtattttgacccttgcttactacaattttaggtatgttac |
44438462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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