View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_low_7 (Length: 616)

Name: NF1063_low_7
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_low_7
NF1063_low_7
[»] chr4 (1 HSPs)
chr4 (1-549)||(2345100-2345648)
[»] chr8 (5 HSPs)
chr8 (11-414)||(7321812-7322221)
chr8 (7-414)||(7319492-7319902)
chr8 (7-417)||(7318209-7318628)
chr8 (170-249)||(7324750-7324829)
chr8 (311-417)||(7324576-7324682)
[»] chr2 (4 HSPs)
chr2 (4-250)||(6521468-6521717)
chr2 (4-141)||(19143999-19144136)
chr2 (4-85)||(19623548-19623629)
chr2 (353-381)||(6521346-6521374)
[»] scaffold0208 (1 HSPs)
scaffold0208 (4-77)||(15648-15721)
[»] chr7 (1 HSPs)
chr7 (4-66)||(10570331-10570393)
[»] chr3 (4 HSPs)
chr3 (423-472)||(32984137-32984186)
chr3 (301-341)||(32984274-32984314)
chr3 (353-381)||(32984243-32984271)
chr3 (115-250)||(32984365-32984503)


Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 2345100 - 2345648
Alignment:
Q  1 caacaaaagcaacagcttttccaacaccagagttcactacaaaatgcaacagtccttttggaaaaactataagatcaccaggtttaatagttttcgaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2345100 caacaaaagcaacagcttttccaacaccagagttcactacaaaatgcaatagtccttttggaaaaactataagatcaccaggtttaatagttttcgaata 2345199  T
Q  101 aactttagttcgcgtaataaatccggcagtaatttgaccttcgacaacgataagtaattcagttgcatcatgagtgtgcactggaacacttccatttata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2345200 aactttagttcgcgtaataaatccggcagtaatttgaccttcgacaacgataagtaattcagttgcatcatgagtgtgcactggaacacttccatttata 2345299  T
Q  201 ccaaaatctgctcttgctacagagataccaagtccattaagacctggtaaactagtgacaaatgcagaggttattgcaaaattaaaagggtttattgtgc 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2345300 ccaaaatctgctcttgctgcagagataccaagtccattaagacctggtaaactagtgacaaatgcagatgttattgcaaaattaaaagggtttattgtgc 2345399  T
Q  301 ttccaggtactaagccagagaacacaaaatcattcactgttacatttgtttctgatttgcatggatagcctgaaggggtgtttggtagtagtaagtctgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2345400 ttccaggtactaagccagagaacacaaaatcattcactgttacatttgtttctgatttgcatggatagcctgaaggggtgtttgggagtagtaagtctgc 2345499  T
Q  401 tacacataaatcatcagcataagaggtatatgatgagagaagaacaaaaaagaaaagaatagtgtgaatcattctgatctttacaaattggatatgggat 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2345500 tacacataaatcatcagcataagaggtatatgatgagagaagaacaaaaaagaaaagaatagtgtgaatcattctgatttttacaaattggatatgggat 2345599  T
Q  501 aagggaaagtgcaattgccttgctatttataatgatatttttcgagatg 549  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||    
T  2345600 aagggaaagtgcaattgccttgctatttataatgatattcttagagatg 2345648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 9e-84; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 11 - 414
Target Start/End: Complemental strand, 7322221 - 7321812
Alignment:
Q  11 aacagcttttccaacaccagagttcactacaaaatgcaacagtccttttggaaaaactataagatcaccaggtttaatagttttcgaataaactttagtt 110  Q
    |||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||| || ||||||| |||||| | ||||| |||||||||| |      
T  7322221 aacagcttttccaacaccagtgttaactaaaaaatgcaaaagtccttttggaaaaactacaatatcaccatgtttaacaattttcaaataaacttttgcc 7322122  T
Q  111 cgcgtaataaatccggcagtaatttgaccttcgacaacgataagtaattcagttgcatca---tgagtgtgcactggaacacttccatttataccaaaat 207  Q
     | ||||||||||| ||||| | ||| | ||| || | |||||| |||||||| ||||||   |||  ||||| ||||||| |||||||||||||||| |    
T  7322121 ggtgtaataaatccagcagttaattggctttcaactatgataagcaattcagtcgcatcaggatgaaagtgcattggaacagttccatttataccaaagt 7322022  T
Q  208 ctgctcttgctacagagataccaagtccattaagacctggtaaactagtgacaaatgcagaggttattgcaaaattaaaagggttta---ttgtgcttcc 304  Q
    || |  ||||| |||||| |||||||| ||||||||||||||||||||| ||||| |||| ||||| || || ||||||||||| ||   ||||||||||    
T  7322021 ctccctttgctgcagagaaaccaagtcgattaagacctggtaaactagtaacaaaagcagtggttaatgtaacattaaaagggtctaatattgtgcttcc 7321922  T
Q  305 aggtactaagccagagaacacaaaatcattcactgttacatttgtttctgatttgcatggatagcctgaaggggtgtttggtagtagtaagtctgctaca 404  Q
     ||||| ||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||| |||||||| ||  |||| ||||| |||    
T  7321921 gggtacaaagccagagaacacaaaatcatctgctgttacatttgtttctgacttgcatggatagcctgaaggagtgtttggaagctgtaaatctgccaca 7321822  T
Q  405 cataaatcat 414  Q
    || |||||||    
T  7321821 cagaaatcat 7321812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 7 - 414
Target Start/End: Complemental strand, 7319902 - 7319492
Alignment:
Q  7 aagcaacagcttttccaacaccagagttcactacaaaatgcaacagtccttttggaaaaactataagatcaccaggtttaatagttttcgaataaacttt 106  Q
    |||||| ||| ||||||||| ||| ||| ||| ||||||| || ||||||||||||| ||||| |  |||||||||||||| ||||||| ||| ||||||    
T  7319902 aagcaatagcatttccaacatcagtgttaactccaaaatgtaaaagtccttttggaataactaaactatcaccaggtttaacagttttcaaatcaacttt 7319803  T
Q  107 agttcgcgtaataaatccggcagtaatttgaccttcgacaacgataagtaattcagttgcatca---tgagtgtgcactggaacacttccatttatacca 203  Q
     ||| | ||||||||||| ||||| |  || ||||  || |||||||| |||||| ||||||||   |||   |||| ||||||| |||||||||  |||    
T  7319802 tgttggtgtaataaatccagcagttaactggcctttaactacgataagcaattcatttgcatcaggatgaaaatgcattggaacagttccatttaagcca 7319703  T
Q  204 aaatctgctcttgctacagagataccaagtccattaagacctggtaaactagtgacaaatgcagaggttattgcaaaattaaaagggtttattgtgcttc 303  Q
    || ||  | |||||| | |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |  || ||||||||||| ||||||| |||    
T  7319702 aagtccccccttgctgcggagataccaagtccattaagacctggtaaactagtgacgaatgcagtggttaatctaacattaaaagggtctattgtgtttc 7319603  T
Q  304 caggtactaagccagagaacacaaaatcattcactgttacatttgtttctgatttgcatggatagcctgaaggggtgtttggtagtagtaagtctgctac 403  Q
     |||||| ||| | ||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||  |||||||||| ||    
T  7319602 taggtacaaagtcggagaataaaaaatcatccactgttacatttgtttctgacttgcatggatagcctgaaggggtatttggaagctgtaagtctgcaac 7319503  T
Q  404 acataaatcat 414  Q
    ||| |||||||    
T  7319502 acagaaatcat 7319492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 417
Target Start/End: Original strand, 7318209 - 7318628
Alignment:
Q  7 aagcaacagcttttccaacaccagagttcactacaaaatgcaacagtccttttggaaaaactataagatcaccaggtttaatagttttcgaataaacttt 106  Q
    |||||| ||| |||||| |||||||||| | |  ||||||||| |||||| ||||||||||   || ||||||||| |||| | |||||    ||| |||    
T  7318209 aagcaatagcatttccatcaccagagttaaattgaaaatgcaatagtcctattggaaaaacccaaacatcaccaggattaagaattttcaccaaaagttt 7318308  T
Q  107 agttcgcgtaataaatccggcagtaatttgaccttcgacaacgataagtaattcagttgcatca---tgagtgtgcactggaacacttccatttatacca 203  Q
     ||  | || || |||||  |||||||||||||||  | |||||| ||||||||||||||||||   |||||||||| ||| ||||||||||||||||||    
T  7318309 tgtaggtgtgatgaatccaacagtaatttgaccttgaataacgattagtaattcagttgcatcaggatgagtgtgcattggtacacttccatttatacca 7318408  T
Q  204 aaatctgctcttgctacagagataccaagtccattaagacctggtaaactagtgacaaatgcagaggttattgcaaaattaaaagggtttattgtgcttc 303  Q
    | ||||  ||||||| |||| |    | ||||||| ||||||| |||| || |||||  | | ||||||| | |||  ||||||||||||  |||| |||    
T  7318409 atatctattcttgctgcagataacttatgtccattgagacctgctaaattactgacatttaccgaggttaatccaactttaaaagggtttgctgtgtttc 7318508  T
Q  304 ---caggtactaagccagagaacacaaaatcattcactgttacatttgtttctgatttgcatggatagcctgaaggggtgtttggt---agtagtaagtc 397  Q
       ||| | |||||| |||| |||  ||||||| | ||||||||  | ||||||||||||||||||||||||||||||||| || |   || | |||||     
T  7318509 cagcagctgctaagctagagtacatgaaatcatccgctgttacaaatttttctgatttgcatggatagcctgaaggggtgtctgatgtaagaaataagtt 7318608  T
Q  398 tgctacacataaatcatcag 417  Q
    ||||||||| ||||||||||    
T  7318609 tgctacacagaaatcatcag 7318628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 7324829 - 7324750
Alignment:
Q  170 atgagtgtgcactggaacacttccatttataccaaaatctgctcttgctacagagataccaagtccattaagacctggta 249  Q
    ||||||||||| ||| ||||||||||| |  |||| ||||  ||||||||||||||||||||||||||| ||||||||||    
T  7324829 atgagtgtgcattggtacacttccattgaagccaagatctattcttgctacagagataccaagtccattgagacctggta 7324750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 311 - 417
Target Start/End: Complemental strand, 7324682 - 7324576
Alignment:
Q  311 taagccagagaacacaaaatcattcactgttacatttgtttctgatttgcatggatagcctgaaggggtgtttggtagtagtaagtctgctacacataaa 410  Q
    |||||||||||| ||||||||||   ||||||||||  |||| || |||||||||||||| |||||||||| ||| |    ||||||||||||||| |||    
T  7324682 taagccagagaatacaaaatcatcagctgttacattgttttccgacttgcatggatagcccgaaggggtgtctggaaacgataagtctgctacacagaaa 7324583  T
Q  411 tcatcag 417  Q
    |||||||    
T  7324582 tcatcag 7324576  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 6521717 - 6521468
Alignment:
Q  4 caaaagcaacagcttttccaacaccagagttcactacaaaatgcaacagtccttttggaaaaactataagatcaccaggtttaatagttttcgaataaac 103  Q
    ||||||||| ||||| |||| |||||||||| |||||||||||||| ||||||||||||||||| |||| ||||  ||| |||| |  |||   ||||||    
T  6521717 caaaagcaatagcttctccagcaccagagttaactacaaaatgcaatagtccttttggaaaaaccataatatcagtaggcttaagatctttgacataaac 6521618  T
Q  104 tttagttcgcgtaataaatccggcagtaatttgaccttcgacaacgataagtaattcagttgcatc---atgagtgtgcactggaacacttccatttata 200  Q
    ||  ||  |  | |||||||| ||||| | |  |||||  || | ||| |||||||||||||||||   |||||| |||| |||||||  |||||||  |    
T  6521617 ttctgtaaggttgataaatccagcagtgactctaccttgaaccatgattagtaattcagttgcatcaggatgagtatgcattggaacagatccatttgga 6521518  T
Q  201 ccaaaatctgctcttgctacagagataccaagtccattaagacctggtaa 250  Q
    ||||  ||| |||||||| |||| ||| |||||||||| |||| ||||||    
T  6521517 ccaatgtctactcttgctgcagatatatcaagtccattgagacttggtaa 6521468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 19143999 - 19144136
Alignment:
Q  4 caaaagcaacagcttttccaacaccagagttcactacaaaatgcaacagtccttttggaaaaactataagatcaccaggtttaatagttttcgaataaac 103  Q
    ||||||||  |||||||||   |||||| || ||| ||||||||||||  |||||||||||||| | || |||||| ||||| |  || || |||||||     
T  19143999 caaaagcagtagcttttcccttaccagaattaactgcaaaatgcaacatcccttttggaaaaacaaaaatatcacccggtttcaacgtcttagaataaaa 19144098  T
Q  104 tttagttcgcgtaataaatccggcagtaatttgacctt 141  Q
    | ||||  |||| | |||||| |||||||||| |||||    
T  19144099 tgtagtaggcgtcaaaaatccagcagtaatttcacctt 19144136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 19623548 - 19623629
Alignment:
Q  4 caaaagcaacagcttttccaacaccagagttcactacaaaatgcaacagtccttttggaaaaactataagatcaccaggttt 85  Q
    ||||||||  |||||||||   |||||| || ||| |||||||||||| ||||| ||||||||| |||| |||||| |||||    
T  19623548 caaaagcagtagcttttcccttaccagaattaactgcaaaatgcaacattccttgtggaaaaacaataatatcacctggttt 19623629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 6521374 - 6521346
Alignment:
Q  353 tgatttgcatggatagcctgaaggggtgt 381  Q
    |||||||||||||||||||||||||||||    
T  6521374 tgatttgcatggatagcctgaaggggtgt 6521346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 15721 - 15648
Alignment:
Q  4 caaaagcaacagcttttccaacaccagagttcactacaaaatgcaacagtccttttggaaaaactataagatca 77  Q
    ||||||||| ||||| |||| ||| |||||| |||||||||||||| ||||||||||||||||| |||| ||||    
T  15721 caaaagcaatagcttctccagcacgagagttaactacaaaatgcaatagtccttttggaaaaaccataatatca 15648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 10570331 - 10570393
Alignment:
Q  4 caaaagcaacagcttttccaacaccagagttcactacaaaatgcaacagtccttttggaaaaa 66  Q
    ||||||||| ||||| |||| ||| |||||| |||||||||||||| ||||||||||||||||    
T  10570331 caaaagcaatagcttctccagcacaagagttaactacaaaatgcaatagtccttttggaaaaa 10570393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 423 - 472
Target Start/End: Complemental strand, 32984186 - 32984137
Alignment:
Q  423 gaggtatatgatgagagaagaacaaaaaagaaaagaatagtgtgaatcat 472  Q
    ||||||||||||||||| |||||||||||||||| |||| ||||| ||||    
T  32984186 gaggtatatgatgagaggagaacaaaaaagaaaacaataatgtgattcat 32984137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 32984314 - 32984274
Alignment:
Q  301 ttccaggtactaagccagagaacacaaaatcattcactgtt 341  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  32984314 ttccaggtacaaagccagagaacacaaaatcatccactgtt 32984274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 32984271 - 32984243
Alignment:
Q  353 tgatttgcatggatagcctgaaggggtgt 381  Q
    |||||||||||||||||||||||||||||    
T  32984271 tgatttgcatggatagcctgaaggggtgt 32984243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 32984503 - 32984365
Alignment:
Q  115 taataaatccggcagtaatttgaccttcgacaacgataagtaattcagttgcatc---atgagtgtgcactggaacacttccatttataccaaaatctgc 211  Q
    |||||||||| || |||| || |||||  || | ||| |||||||||||||||||   |||||| ||||  ||||||  |||||||| ||||| |||| |    
T  32984503 taataaatccagctgtaactttaccttgaaccatgattagtaattcagttgcatcgggatgagtatgcatcggaacagatccatttacaccaatatctac 32984404  T
Q  212 tcttgctacagagataccaagtccattaagacctggtaa 250  Q
    ||||||  |||||| | | |||||||| |||| ||||||    
T  32984403 tcttgccgcagagacatcgagtccattgagacttggtaa 32984365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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