View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1063_low_9 (Length: 553)
Name: NF1063_low_9
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 30 - 545
Target Start/End: Original strand, 41891311 - 41891826
Alignment:
| Q |
30 |
ggtttttcaggtgttgatggaatcgtagcttgaatttcaagggtcactgcatggccagcaaatgcaaatgatatttgaccaagtgcattgaagactctga |
129 |
Q |
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| T |
41891311 |
ggtttttcaggtgttgatggaatcgtagcttgaatttcaagggtcactgcatggccagcaaatgcaaatgatatttgaccaagtgcattgaagactctga |
41891410 |
T |
|
| Q |
130 |
acaataaatcaattttgctgattggtttgtatgcatagctaacattgtcaatccggcctctaggtaagcaagccacccatgctatagttgaataactgca |
229 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41891411 |
acaataaatcagttttgctgattggtttgtatgcatagctaacattgtcaatccggcctctaggtaagcaagccacccatgctatagttgaataactgca |
41891510 |
T |
|
| Q |
230 |
gtcaaaacaccacaatatcaaggctttagttgaatatgaattttttatgaggtcttgtaatactctagcttacacacgcttaactgtagagttctgattg |
329 |
Q |
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| T |
41891511 |
ctcaaaacaccacaatatcaaggctttagttgaatatgaattttttatgaggtcttgtaatactctagcttacacacgcttaactgtagagttctgattg |
41891610 |
T |
|
| Q |
330 |
ggttcggcgcattagtaccgatacaattgcacctatttttgtagctataatttaatatcaacggtcaacagcttgatcaactgacatatcgaagcattct |
429 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
41891611 |
ggttcggcacattagtaccgatacaattgcacctatttttgtagctataatttaatatcaacagtcaacagcttgatcaactgacatgtcgaagcattct |
41891710 |
T |
|
| Q |
430 |
ttaatttgcatctactaggagttgtgtattatcctctactaaatcttactttcaattgattcaattacaacataagttcaaaaactgagttcaccaactg |
529 |
Q |
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| T |
41891711 |
ttaatttgcatctactaggagttgtgtattatcctctactaaatcttactttcaattgattcaattgcaacataagttcaaaaactgagttcaccaactg |
41891810 |
T |
|
| Q |
530 |
tttatttgcctatgct |
545 |
Q |
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||||||||||| |||| |
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| T |
41891811 |
tttatttgcctctgct |
41891826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 41896887 - 41897093
Alignment:
| Q |
30 |
ggtttttcaggtgttgatggaatcgtagcttgaatttcaagggtcactgcatggccagcaaatgcaaatgatatttgaccaagtgcattgaagactctga |
129 |
Q |
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||||| ||||||||||||||||| ||||| |||||||| || |||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||| | |
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| T |
41896887 |
ggtttctcaggtgttgatggaattgtagcctgaatttctagtgtcactgcttggccagaaaatgcaaatgagatttgaccaagtgcactgaagactctaa |
41896986 |
T |
|
| Q |
130 |
acaataaatcaattttgctgattggtttgtatgcatagctaacattgtcaatccggcctctaggtaagcaagccacccatgctatagttgaataactgca |
229 |
Q |
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||||||||||| ||||||||||| | |||||||||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||| |
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| T |
41896987 |
acaataaatcagttttgctgatttgcttgtatgcatagttaacattgtcaatccgacctctagataagcatgccacccatgctatagttgaatagctgca |
41897086 |
T |
|
| Q |
230 |
gtcaaaa |
236 |
Q |
| |
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||||||| |
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| T |
41897087 |
gtcaaaa |
41897093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 22550623 - 22550430
Alignment:
| Q |
30 |
ggtttttcaggtgttgatggaatcgtagcttgaatttcaagggtcactgcatggccagcaaatgcaaatgatatttgaccaagtgcattgaagactctga |
129 |
Q |
| |
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||||| ||||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| || || |
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| T |
22550623 |
ggtttctcaggtgttgatggaattgttgcttgaatttcaagtgctactgcatggccagcaaatgcaaatgaaatttgaccaagtgcattgaagattcgga |
22550524 |
T |
|
| Q |
130 |
acaataaatcaattttgctgattggtttgtatgcatagctaacattgtcaatccggcctctaggtaagcaagccacccatgctatagttgaata |
223 |
Q |
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| | ||| ||| || |||| || |||||||| |||||| ||||| |||| || ||| | | ||||||||| ||||| |||||||||||||| |
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| T |
22550523 |
atattaagtcacttgtgcttgttcctttgtatgaatagctcacattctcaaccctacctttggctaagcaagctacccaggctatagttgaata |
22550430 |
T |
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