View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_high_1 (Length: 438)
Name: NF10640_high_1
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 6 - 420
Target Start/End: Original strand, 7969511 - 7969926
Alignment:
| Q |
6 |
acaatgctaacaacattaattagtgacgtaggcacattaaaacggaacttgatatatatcaagtaaccaccaaaccaatcgcaataaatagcgaatcttt |
105 |
Q |
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| T |
7969511 |
acaatgctaacaacattaattagtgacgtaggcacattaaaacggaacttgatatatatcaagtaaccgccagaccaatcgcaataaatagcgaatcttt |
7969610 |
T |
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| Q |
106 |
taaaggtgaaggagtcccaagtaggtaacacggttggaaaactacggaccagagttcaaactccgaaaactaaggaagccactaattttcttacaacatt |
205 |
Q |
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| T |
7969611 |
taaaggtgaaggagtcccaagtaggtaacacggttggaaaactacggaccagagttcaaactccgaaaactaaggaagccactaattttcttacaacatt |
7969710 |
T |
|
| Q |
206 |
tgcctat-nnnnnnnnggtataaaggtagaatattttacccatcttcctgaagtacaagaaattagtaaccaaacgccaaaactgatactgcttcacaac |
304 |
Q |
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| T |
7969711 |
tgcctataaaaaaaaaggtataaaggtagaatattttacccatcttcctgaagtacaagaaattagtaaccaaacgccaaaactgatactgcttcacaac |
7969810 |
T |
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| Q |
305 |
caatctagggttcaagtacagatgatacggagaaattatctgcaaaatcataaacaaatacaccaatcaattaaacccatcacagttcaataattaagaa |
404 |
Q |
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| T |
7969811 |
caatctggggttcaagtacagatgatacggagaaattatctgcaaaatcataaacaaatacatcaatcaattaaacccatcacagtgcaataattaagaa |
7969910 |
T |
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| Q |
405 |
ctaaaacctatagaat |
420 |
Q |
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| T |
7969911 |
ctaaaacctatagaat |
7969926 |
T |
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