View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10640_high_5 (Length: 253)

Name: NF10640_high_5
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10640_high_5
NF10640_high_5
[»] chr8 (4 HSPs)
chr8 (67-240)||(411424-411597)
chr8 (67-237)||(18191049-18191219)
chr8 (67-241)||(18194725-18194899)
chr8 (65-113)||(10190882-10190930)
[»] chr1 (2 HSPs)
chr1 (75-241)||(4957834-4958000)
chr1 (65-241)||(26075169-26075336)
[»] chr7 (2 HSPs)
chr7 (3-241)||(5113418-5113639)
chr7 (140-189)||(3952574-3952623)
[»] chr4 (1 HSPs)
chr4 (67-194)||(26078879-26079012)
[»] chr6 (3 HSPs)
chr6 (85-225)||(14321108-14321250)
chr6 (65-177)||(21461940-21462051)
chr6 (103-177)||(21465203-21465276)
[»] scaffold1322 (1 HSPs)
scaffold1322 (88-234)||(338-486)
[»] chr2 (1 HSPs)
chr2 (67-128)||(12392067-12392127)
[»] chr3 (2 HSPs)
chr3 (133-189)||(32366705-32366761)
chr3 (133-180)||(32372419-32372464)
[»] chr5 (1 HSPs)
chr5 (65-113)||(35276883-35276931)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 411424 - 411597
Alignment:
Q  67 tttaatccataatcatgcttaacaaacatttaacagtttagtttgttactttggataaacttcattttagttagttacaagagacttactctataagtca 166  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  411424 tttaatccataatcatgcttaacaaacacttaagagtttagtttgttactttggataaacttcattttaattagttacaagagacttactctataagtca 411523  T
Q  167 ttgtatatatacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctctctc 240  Q
    ||||||||||||||| |||||| |||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  411524 ttgtatatatacttgcttgtaatacaatcattagtgagaataaaattttcaattcaatattctatctctctctc 411597  T

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Target: chr8; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 67 - 237
Target Start/End: Original strand, 18191049 - 18191219
Alignment:
Q  67 tttaatccataatcatgcttaacaaacatttaacagtttagtttgttactttggataaacttcattttagttagttacaagagacttactctataagtca 166  Q
    ||||||||||||| |||||||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18191049 tttaatccataatgatgcttaagaaacacttaagagtttagtttgttattttggataaacttcattttagttagttacaagagacttactctataagtca 18191148  T
Q  167 ttgtatatatacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctct 237  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  18191149 ttgtatatatacttgcttgtaacacaatcattagtgtgaataaaattttcaattcaatattctatctctct 18191219  T

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Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 67 - 241
Target Start/End: Original strand, 18194725 - 18194899
Alignment:
Q  67 tttaatccataatcatgcttaacaaacatttaacagtttagtttgttactttggataaacttcattttagttagttacaagagacttactctataagtca 166  Q
    |||||| ||||||||||||||||||||| |||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18194725 tttaatacataatcatgcttaacaaacacttaagattttagttcgttattttggataaacttcattttagttagttacaagagacttactttataagtca 18194824  T
Q  167 ttgtatatatacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctctctct 241  Q
    ||||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  18194825 ttgtatatatacttgcttgtaacacaatcattactgtgaataaaattttcaattcaatattctttctctctctct 18194899  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 10190882 - 10190930
Alignment:
Q  65 gttttaatccataatcatgcttaacaaacatttaacagtttagtttgtt 113  Q
    ||||||||||||||||||| ||||||||   |||| |||||||||||||    
T  10190882 gttttaatccataatcatgattaacaaatgcttaagagtttagtttgtt 10190930  T

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Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 4958000 - 4957834
Alignment:
Q  75 ataatcatgcttaacaaacatttaacagtttagtttgttactttggataaacttcattttagttagttacaagagacttactctataagtcattgtatat 174  Q
    ||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  4958000 ataattatgcttaacaaacacttaagagtttagtttgttgctttggataaacttcattttatttagttacaagatacttactctataagtcattgtatat 4957901  T
Q  175 atacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctctctct 241  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  4957900 atacttgcttgtaacacaatcattagtgtgaataaaattttcaattcaatattctctctctctctct 4957834  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 65 - 241
Target Start/End: Complemental strand, 26075336 - 26075169
Alignment:
Q  65 gttttaatccataatcatgcttaacaaacatttaaca---gtttagtttgttactttggataaacttcattttagttagttacaagagacttactctata 161  Q
    |||||||||||||||||||||||||||||| |||| |   ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  26075336 gttttaatccataatcatgcttaacaaacacttaagaagagtttagtttgttattttggataaacttcattt-agttagttacaagagacttactctata 26075238  T
Q  162 agtcattgtatatatacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctctctct 241  Q
    ||||            |||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  26075237 agtc-----------tcttgcttgtaacacaatcattagtgtgaataaaattttcaattcaatattctatctctctctct 26075169  T

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Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 5113418 - 5113639
Alignment:
Q  3 acccatttcaaagctttagattctgacttgtctttgttgggtgagtattattagnnnnnnnngttttaatccataatcatgcttaacaaacatttaacag 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||| |||| ||    
T  5113418 acccatttcaaagctttagattctgacttgtctttcttgggtgagtattattagtttgtgt-gttttaatccataatcatgcttaacaaacacttaagag 5113516  T
Q  103 tttagtttgttactttggataaacttcattttagttagttacaagagacttactctataagtcattgtatatatacttgtttgtaacacaatttttagtg 202  Q
    |||| ||||||| |||||||||||||||||||| |||||||||  ||||||||||                |||||||| |||||||||||| |||||||    
T  5113517 tttaatttgttattttggataaacttcattttaattagttacagaagacttactc----------------tatacttgcttgtaacacaatctttagtg 5113600  T
Q  203 tgaataaaattttcaattcaatattctatctctctctct 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5113601 tgaataaaattttcaattcaatattctatctctctctct 5113639  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 3952623 - 3952574
Alignment:
Q  140 gttacaagagacttactctataagtcattgtatatatacttgtttgtaac 189  Q
    |||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  3952623 gttacaagagacttgctctctaagtcattgtatatatacttgcttgtaac 3952574  T

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Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 26078879 - 26079012
Alignment:
Q  67 tttaatccataatcatgcttaacaaacatttaacagtttagtttgttactttggataaacttcattttagttagttacaagagacttactctataagtc- 165  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  26078879 tttaatccataatcatgcttaacaaacacttaagagtttagtttgttactttggagaaacttcattttagttagttacaagagacttactctataagtca 26078978  T
Q  166 -----attgtatatatacttgtttgtaacacaat 194  Q
         |||||||||||||||||||||||||||||    
T  26078979 ttaatattgtatatatacttgtttgtaacacaat 26079012  T

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Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 14321250 - 14321108
Alignment:
Q  85 ttaacaaacatttaacagtttagtttgttactttggataaacttcattttagttagttacaagagacttactctataagtcattgtatatatacttgttt 184  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  14321250 ttaacaaacacttaagagtttagtttgttagtttggataaacttcactttagttagttacaagagacttactctataagtcattgtatatatatttgctt 14321151  T
Q  185 gtaacacaat--ttttagtgtgaataaaattttcaattcaata 225  Q
    ||||| ||||  |||  ||||||||||||||||||||||||||    
T  14321150 gtaactcaatcatttgtgtgtgaataaaattttcaattcaata 14321108  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 21461940 - 21462051
Alignment:
Q  65 gttttaatccataatcatgcttaacaaacatttaacagtttagtttgttac-tttggataaacttcattttagttagttacaagagacttactctataag 163  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||| ||| |  |||||||||||||||||||||||||| ||||    
T  21461940 gttttaatccataatcatgattaacaaacacttaatagtttagtttgttacttttggataagcttga--ttagttagttacaagagacttactctctaag 21462037  T
Q  164 tcattgtatatata 177  Q
    ||||||||||||||    
T  21462038 tcattgtatatata 21462051  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 21465203 - 21465276
Alignment:
Q  103 tttagtttgttacttt-ggataaacttcattttagttagttacaagagacttactctataagtcattgtatatata 177  Q
    |||||||||||||||| |||||| ||| |||  |||| |||||| |||||||||||| ||||||||||||||||||    
T  21465203 tttagtttgttacttttggataagcttgatt--agttggttacaggagacttactctctaagtcattgtatatata 21465276  T

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Target: scaffold1322 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 486 - 338
Alignment:
Q  88 acaaacatttaacagtttagtttgttactttggataaacttcattttagttagttacaagagacttactctataagtcattgtatatatacttgtttgta 187  Q
    ||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  486 acaaacacttaagagtttagtttgttagtttggataaacttcactttagttagttacaagagacttactctataagtcattgtatatatacttgcttgca 387  T
Q  188 acacaat--ttttagtgtgaataaaattttcaattcaatattctatctc 234  Q
    || ||||  |||  |||||||||||||||||||||||||| ||| ||||    
T  386 actcaatcatttgtgtgtgaataaaattttcaattcaatactctctctc 338  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 12392067 - 12392127
Alignment:
Q  67 tttaatccataatcatgcttaacaaacatttaacagtttagtttgttactttggataaactt 128  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  12392067 tttaatccata-tcatgcttaacaaacacttaagagtttagtttgttactttggataaactt 12392127  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 32366761 - 32366705
Alignment:
Q  133 ttagttagttacaagagacttactctataagtcattgtatatatacttgtttgtaac 189  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||  |||||||    
T  32366761 ttaggtagttacaagagacttgctctctaagtcattgtatatatacttacttgtaac 32366705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 32372464 - 32372419
Alignment:
Q  133 ttagttagttacaagagacttactctataagtcattgtatatatactt 180  Q
    |||| |||||||||||||||| |||||  |||||||||||||||||||    
T  32372464 ttaggtagttacaagagactttctcta--agtcattgtatatatactt 32372419  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 35276931 - 35276883
Alignment:
Q  65 gttttaatccataatcatgcttaacaaacatttaacagtttagtttgtt 113  Q
    ||||||||||||||||||| ||||||||   |||| |||||||||||||    
T  35276931 gttttaatccataatcatgattaacaaatgcttaagagtttagtttgtt 35276883  T

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