View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_high_6 (Length: 250)
Name: NF10640_high_6
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_high_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 40707759 - 40707946
Alignment:
| Q |
69 |
aatatcatgaatagctgcttctttgtgacggaaagctaaaacagttgccaaccaaatcatcttgaaagctaaaacagtaaatt------cacccccaagc |
162 |
Q |
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| T |
40707759 |
aatatcatgaatagctgcttctttgttacggaaagctaaaacagttgccaaccaaatcattttgaaagctaaaacagtaaattttgatccacccccaagc |
40707858 |
T |
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| Q |
163 |
cgcagaaatgacgtagatgcgacaagaggttcaatgaagaggcagcaggattaccaagccagccactaattaggacccaaatgttacc |
250 |
Q |
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| T |
40707859 |
cgcagaaatgacgcagatacgacaagaggatcggtgaagaggcggcaggaataccaagccagccactaattaggacccaaatgttacc |
40707946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 47164016 - 47164086
Alignment:
| Q |
11 |
caaaggaaacaaacttcgccttgaaccaccaaaaaactgtaagcttaacttgttcacaaatatcatgaata |
81 |
Q |
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| T |
47164016 |
caaaggaaacaaacttcgctttgaaccaccaaaaaactgtaagcttaatctgttcacaaatgtcatgaata |
47164086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 24316891 - 24316800
Alignment:
| Q |
11 |
caaaggaaacaaacttcgccttgaaccaccaaaaaactgtaagcttaacttgttcacaaatatcatgaatagctgcttctttgtgacggaaa |
102 |
Q |
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| T |
24316891 |
caaaggaaacaaacttcgctttgaaccaccaaaaagttgtgagcttaatatgttcacagatatcatgaatagatgcttccttgttacggaaa |
24316800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 250
Target Start/End: Complemental strand, 24316768 - 24316619
Alignment:
| Q |
107 |
aaacagttgccaaccaaatcatcttgaaagctaaaacagtaaatt------cacccccaagccgcagaaatgacgtagatgcgacaagaggttcaatgaa |
200 |
Q |
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| T |
24316768 |
aaacagctgccaattaaatcatcttgagagctaaaacagtaaatttcaatccacccccaaactgcagaaatgacgcatatgcgacaagaggttcggtgaa |
24316669 |
T |
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| Q |
201 |
gaggcagcaggattaccaagccagccactaattaggacccaaatgttacc |
250 |
Q |
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| T |
24316668 |
gaggccgtagaaaaaccaagccagacacaaattagaacccaaatattacc |
24316619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 15134688 - 15134646
Alignment:
| Q |
11 |
caaaggaaacaaacttcgccttgaaccaccaaaaaactgtaag |
53 |
Q |
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| T |
15134688 |
caaaggaaacaaacttcaccttgaaccaccaaaaaagtgtaag |
15134646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 2591104 - 2591153
Alignment:
| Q |
19 |
acaaacttcgccttgaaccaccaaaaaactgtaagcttaacttgttcaca |
68 |
Q |
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| T |
2591104 |
acaaacttcgatttgaaccaccaaaaaattataagcttaacatgttcaca |
2591153 |
T |
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