View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10640_low_1 (Length: 444)

Name: NF10640_low_1
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10640_low_1
NF10640_low_1
[»] chr6 (1 HSPs)
chr6 (167-432)||(22391396-22391661)
[»] chr4 (2 HSPs)
chr4 (167-315)||(1661671-1661818)
chr4 (249-315)||(5742308-5742374)
[»] chr3 (2 HSPs)
chr3 (206-331)||(53556039-53556167)
chr3 (241-331)||(38510048-38510139)
[»] scaffold0007 (1 HSPs)
scaffold0007 (334-399)||(79922-79987)
[»] chr2 (4 HSPs)
chr2 (241-315)||(37457965-37458039)
chr2 (241-315)||(27561527-27561601)
chr2 (241-331)||(22144479-22144570)
chr2 (269-331)||(7195294-7195357)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 167 - 432
Target Start/End: Original strand, 22391396 - 22391661
Alignment:
Q  167 aaattaaaaagctcaaaaataccaattccctnnnnnnnnctacaacaatttatctattgtctttgatgaaataacaaaatgaaaaaacaactaaagacag 266  Q
    |||||||||||||||||||| ||||||||||        ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  22391396 aaattaaaaagctcaaaaatcccaattccctaaaaaaaactacagcaatttatctattgtctttgatgaaataacaaaatgaaaaaacaactaaagaacg 22391495  T
Q  267 attaatttaccaatattcaatcgatgtagatgtcatcaagtccatatttcaacaaaccttttataatacccaaaactcctatttatttgacagagaagtc 366  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  22391496 attaatttaccaataatcaatccatgtagatgtcatcaagtccatatttcaacaaaccttttataatacccaaatcttctatttatttgacagagaagtc 22391595  T
Q  367 tccgaggacatgcataaaacaaatttttattttacaccagttagtcaatgtactcggttcattctg 432  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22391596 tccgaggacatacataaaacaaatttttattttacaccagttagtccatgtactcggttcattctg 22391661  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 1661671 - 1661818
Alignment:
Q  167 aaattaaaaagctcaaaaataccaattccctnnnnnnnnctacaacaatttatctattgtctttgatgaaataacaaaatgaaaaaacaactaaagacag 266  Q
    |||||||||||||||||||| |||||| |||        |||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||| | ||    
T  1661671 aaattaaaaagctcaaaaatcccaattgcctaaaaaac-ctacaacaatttatatatggtctttggtgaaaaaacaaaatgaaaaaacaactaaataaag 1661769  T
Q  267 attaatttaccaatattcaatcgatgtagatgtcatcaagtccatattt 315  Q
    ||||||||||||||   ||||| ||||||||||||||||||||||||||    
T  1661770 attaatttaccaattagcaatccatgtagatgtcatcaagtccatattt 1661818  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 5742308 - 5742374
Alignment:
Q  249 aaaaacaactaaagacagattaatttaccaatattcaatcgatgtagatgtcatcaagtccatattt 315  Q
    ||||||||||| | | |||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  5742308 aaaaacaactacaaaaagattaatttaccagtaatcaatccatgtagatgtcatcaagtccatattt 5742374  T

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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 206 - 331
Target Start/End: Original strand, 53556039 - 53556167
Alignment:
Q  206 ctacaacaatttatctattgtctttgatgaaataacaaaatgaaaa--aacaactaaagacagattaatttaccaatattcaatcgatgtagatgtcatc 303  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||  |||||||| ||| || ||||||||| |||| | |||| ||||||||||||||    
T  53556039 ctacaacaatttatctatggtctttgatgaaaaaacaaaataaaaaaaaacaactacagaaaggttaatttacaaataataaatccatgtagatgtcatc 53556138  T
Q  304 aagtccatattt-caacaaaccttttata 331  Q
    |||||||||||| || |||||||||||||    
T  53556139 aagtccatatttgcagcaaaccttttata 53556167  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 331
Target Start/End: Original strand, 38510048 - 38510139
Alignment:
Q  241 caaaatgaaaaaacaactaaagacagattaatttaccaatattcaatcgatgtagatgtcatcaagtccatattt-caacaaaccttttata 331  Q
    |||||| |||||||||||| | | | |||| |||||||||| |||||| |||||||||||||||||||||||||| || |||||||||||||    
T  38510048 caaaattaaaaaacaactacaaaaatattagtttaccaataatcaatccatgtagatgtcatcaagtccatatttgcagcaaaccttttata 38510139  T

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Target: scaffold0007 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 79922 - 79987
Alignment:
Q  334 acccaaaactcctatttatttgacagagaagtctccgaggacatgcataaaacaaatttttatttt 399  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  79922 acccaaatctcctatttatttgacagagaagtctccgaggacatacataaaacaaatttttatttt 79987  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 37458039 - 37457965
Alignment:
Q  241 caaaatgaaaaaacaactaaagacagattaatttaccaatattcaatcgatgtagatgtcatcaagtccatattt 315  Q
    |||||| |||||||||||| | | ||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  37458039 caaaattaaaaaacaactacaaaaagattaatttaccaataatcaatccatgtagatgtcatcaagtccatattt 37457965  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 27561601 - 27561527
Alignment:
Q  241 caaaatgaaaaaacaactaaagacagattaatttaccaatattcaatcgatgtagatgtcatcaagtccatattt 315  Q
    |||||| |||||||||||| | | |||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  27561601 caaaattaaaaaacaactacaaaaagattaatttaccagtaatcaatccatgtagatgtcatcaagtccatattt 27561527  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 331
Target Start/End: Original strand, 22144479 - 22144570
Alignment:
Q  241 caaaatgaaaaaacaactaaagacagattaatttaccaatattcaatcgatgtagatgtcatcaagtccatatt-tcaacaaaccttttata 331  Q
    |||||| |||||||||||| | | |||||| |||||||||| |||||| ||||||||||||||||||||| |||  || |||||||||||||    
T  22144479 caaaattaaaaaacaactacaaaaagattagtttaccaataatcaatccatgtagatgtcatcaagtccagattagcagcaaaccttttata 22144570  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 7195357 - 7195294
Alignment:
Q  269 taatttaccaatattcaatcgatgtagatgtcatcaagtccatattt-caacaaaccttttata 331  Q
    |||||||||| ||  |||||| | ||||||||| ||||||||||||| ||||||||||||||||    
T  7195357 taatttaccactaaccaatcgctttagatgtcaccaagtccatatttgcaacaaaccttttata 7195294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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