View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10640_low_10 (Length: 321)

Name: NF10640_low_10
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10640_low_10
NF10640_low_10
[»] chr7 (5 HSPs)
chr7 (14-305)||(2534559-2534850)
chr7 (14-90)||(2524972-2525052)
chr7 (194-271)||(3219941-3220018)
chr7 (198-266)||(42513169-42513237)
chr7 (194-225)||(3756226-3756257)
[»] chr8 (2 HSPs)
chr8 (140-270)||(12691670-12691799)
chr8 (194-271)||(24248727-24248804)
[»] chr2 (2 HSPs)
chr2 (198-271)||(4472801-4472874)
chr2 (195-271)||(42904907-42904983)
[»] chr1 (3 HSPs)
chr1 (200-271)||(45066106-45066177)
chr1 (214-266)||(21076052-21076103)
chr1 (205-270)||(9893726-9893790)
[»] chr3 (4 HSPs)
chr3 (91-266)||(30911921-30912098)
chr3 (91-232)||(55211825-55211968)
chr3 (191-251)||(18864410-18864470)
chr3 (210-238)||(18864472-18864500)
[»] scaffold1064 (1 HSPs)
scaffold1064 (195-271)||(455-531)
[»] chr6 (3 HSPs)
chr6 (198-266)||(4834694-4834762)
chr6 (198-270)||(3293415-3293487)
chr6 (198-266)||(33242824-33242891)
[»] chr4 (1 HSPs)
chr4 (196-271)||(9236881-9236956)
[»] scaffold0526 (1 HSPs)
scaffold0526 (191-238)||(1172-1219)
[»] chr5 (3 HSPs)
chr5 (194-266)||(10321974-10322046)
chr5 (198-266)||(8123503-8123571)
chr5 (194-270)||(39003876-39003952)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 2534850 - 2534559
Alignment:
Q  14 acatcatgttcttcaaagaaacattgtcgagtttgattatacataaagcccttgacaataagaatccaacatgattgtgataggatacttagaataagga 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2534850 acatcatgttcttcaaagaaacattgtcgagtttgattgtacataaagcccttgacaataagaatccaacatgattgtgataggatacttagaataagga 2534751  T
Q  114 gtactgatgtgcgactcagttatttctagaagcaagtacgactcatcctaatctagaacgatctatatgcattctgatatggagtaatattgagtatgtt 213  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2534750 gtactgatgtgcgactcagttatttctagaagctagtacgactcatcctaatctagaacgatctatatgcattctgatagggagtaatattgagtatgtt 2534651  T
Q  214 agggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgaccttcaggtggaatgaatgaaaaatataatcatgttct 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2534650 agggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgaccttaaggtggaatgaatgaaaaatataatcatgttct 2534559  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 2524972 - 2525052
Alignment:
Q  14 acatcatgttcttcaaagaaacattgtcgagtttgattatacataaagccc----ttgacaataagaatccaacatgattg 90  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||    |||||||||||||||| |||||||||    
T  2524972 acatcatgttcttcaaagaaacattgtcgagtttgattgtacacaaagcccaagattgacaataagaatccgacatgattg 2525052  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 3220018 - 3219941
Alignment:
Q  194 ggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 271  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||| || |||| |||||||||| |||||||||||||    
T  3220018 ggagtaatattgaatatgtttgggtacacttgtcttattgtgggtgtgcatttacctatataagaattgtatgacctt 3219941  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 42513237 - 42513169
Alignment:
Q  198 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 266  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||| |   | ||||||||||||||||||    
T  42513237 taatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatg 42513169  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 225
Target Start/End: Complemental strand, 3756257 - 3756226
Alignment:
Q  194 ggagtaatattgagtatgttagggtgcacttg 225  Q
    ||||||||||||||||||||||||||||||||    
T  3756257 ggagtaatattgagtatgttagggtgcacttg 3756226  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 12691799 - 12691670
Alignment:
Q  140 tagaagcaagtacgactcatcctaatctagaacgatcta-tatgcattctgatatggagtaatattgagtatgttagggtgcacttgtcttattgtgggt 238  Q
    |||||||||||| |||| ||| |||||||||| |||||| | ||||||||| ||  |||||||||||||||| |||||||||||||||||||||| ||||    
T  12691799 tagaagcaagtatgacttatcttaatctagaaggatctagtttgcattctgtta--gagtaatattgagtatattagggtgcacttgtcttattgcgggt 12691702  T
Q  239 atgaatttgcctatataagcattgtatgacct 270  Q
    |||||||| ||||||||| |||||||||||||    
T  12691701 atgaatttacctatataaacattgtatgacct 12691670  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 24248727 - 24248804
Alignment:
Q  194 ggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 271  Q
    |||||||||||||||||| || | |||||||||||| |||||||| |   ||| |||||||||| |||||||||||||    
T  24248727 ggagtaatattgagtatggtatgatgcacttgtcttgttgtgggtgttcgtttacctatataagtattgtatgacctt 24248804  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 4472801 - 4472874
Alignment:
Q  198 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 271  Q
    ||||||||| ||||||| ||||||||||||||||||||||  || |||| ||||||||||||||||||||||||    
T  4472801 taatattgaatatgttatggtgcacttgtcttattgtgggagtgtatttacctatataagcattgtatgacctt 4472874  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 42904907 - 42904983
Alignment:
Q  195 gagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 271  Q
    ||||| ||||||||||||| |||||| ||| ||||||||| | | |  |||| ||||||||| ||||||||||||||    
T  42904907 gagtactattgagtatgttggggtgcgcttatcttattgtagatgtacatttacctatataaacattgtatgacctt 42904983  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 45066177 - 45066106
Alignment:
Q  200 atattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 271  Q
    ||||||||||||||||||||||||||||||||||||  | || |||| |||||||||| ||||||| |||||    
T  45066177 atattgagtatgttagggtgcacttgtcttattgtgaatgtgcatttacctatataagtattgtataacctt 45066106  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 21076103 - 21076052
Alignment:
Q  214 agggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 266  Q
    ||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||    
T  21076103 agggtgcacttgttttattgtggatatgtatttg-ctatataagcattgtatg 21076052  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 9893726 - 9893790
Alignment:
Q  205 gagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacct 270  Q
    |||||||| |||||||||||||| ||| ||| | |||| |||| ||||||||||||| ||||||||    
T  9893726 gagtatgtaagggtgcacttgtcatatcgtgagaatga-tttgtctatataagcattttatgacct 9893790  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 266
Target Start/End: Original strand, 30911921 - 30912098
Alignment:
Q  91 tgataggatacttagaataaggagtactgatgtg-cgactcagttatttctagaagcaagtacgactcatcctaatctagaacgatct-atatgcattct 188  Q
    |||||||||||||||||||| ||||||| |||||  ||||| |||| |||||||||  | || |||||| | |||||||||| ||||| | ||  ||  |    
T  30911921 tgataggatacttagaataatgagtactaatgtgatgactcggttagttctagaagttattatgactcaccttaatctagaaggatctaaaatatatctt 30912020  T
Q  189 gatatggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 266  Q
    | || ||  ||||||||||||||||||||||||||| | |||||||| ||||| |   | ||||||||| ||||||||    
T  30912021 gttaggggataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagtctatataagtattgtatg 30912098  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 55211968 - 55211825
Alignment:
Q  91 tgataggatacttagaataaggagtactgatgtg-cgactcagttatttctagaagcaagtacgactcatcctaatctagaacgatctatatgc-attct 188  Q
    |||||||||| ||||||||||||| ||| ||||| |||||| | || ||||| |||  |  |||||||||| ||||||| || |||| ||| |  ||  |    
T  55211968 tgataggatatttagaataaggagcactaatgtggcgactcggctagttctaaaagttatcacgactcatcttaatctaaaaggatccataaggtatatt 55211869  T
Q  189 gatatggagtaatattgagtatgttagggtgcacttgtcttatt 232  Q
    | || ||  ||||||||||||||||||||||||||| |||||||    
T  55211868 ggtaggggataatattgagtatgttagggtgcacttatcttatt 55211825  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 18864470 - 18864410
Alignment:
Q  191 tatggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgccta 251  Q
    |||||||||||||| ||||| |||||||  | |||||||||||||||| || |||| ||||    
T  18864470 tatggagtaatatttagtatcttagggtatatttgtcttattgtgggtgtgcatttaccta 18864410  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 18864500 - 18864472
Alignment:
Q  210 tgttagggtgcacttgtcttattgtgggt 238  Q
    |||||||||||||||||||||||||||||    
T  18864500 tgttagggtgcacttgtcttattgtgggt 18864472  T

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Target: scaffold1064 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 455 - 531
Alignment:
Q  195 gagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 271  Q
    ||||||||||||||||||||||||| |||  ||||||||| ||| || ||||  |||||||||||||||| ||||||    
T  455 gagtaatattgagtatgttagggtgtactcatcttattgtaggtgtgtatttaactatataagcattgtaagacctt 531  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 4834694 - 4834762
Alignment:
Q  198 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 266  Q
    ||||||||||||||||||||||||||| ||||||| || ||||| ||  | ||||||||||||||||||    
T  4834694 taatattgagtatgttagggtgcacttatcttattatgagtatgcataagtctatataagcattgtatg 4834762  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 3293487 - 3293415
Alignment:
Q  198 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacct 270  Q
    ||||||| | ||||||| |||||||||||||||||| |||| || ||||  |||||||| |||||||||||||    
T  3293487 taatattaaatatgttatggtgcacttgtcttattgcgggtgtgcatttatctatataaacattgtatgacct 3293415  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 33242824 - 33242891
Alignment:
Q  198 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 266  Q
    ||||||||||||||||| ||||||||| ||||||| || ||||| |   | ||||||||||||||||||    
T  33242824 taatattgagtatgtta-ggtgcacttatcttattatgagtatgcacaagtctatataagcattgtatg 33242891  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 9236881 - 9236956
Alignment:
Q  196 agtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 271  Q
    ||||||||||||||||||| |||| |||  ||||||||| ||| || |||| ||||||||||||||||| ||||||    
T  9236881 agtaatattgagtatgttaaggtgtactcatcttattgtaggtgtgtatttacctatataagcattgtaagacctt 9236956  T

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Target: scaffold0526 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 1172 - 1219
Alignment:
Q  191 tatggagtaatattgagtatgttagggtgcacttgtcttattgtgggt 238  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||    
T  1172 tatggagtaatattgagtatcttagggtgcatttgttttattgtgggt 1219  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 10322046 - 10321974
Alignment:
Q  194 ggagtaatattgagtatgttagggtgcacttgtctt-attgtgggtatgaatttgcctatataagcattgtatg 266  Q
    |||||| |||||||||  ||||||||||||||| || |||||||| |||  |||||||||||||||||||||||    
T  10322046 ggagtattattgagtactttagggtgcacttgtttttattgtgggaatgt-tttgcctatataagcattgtatg 10321974  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 8123503 - 8123571
Alignment:
Q  198 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 266  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||| |   | ||||||||||||||||||    
T  8123503 taatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatg 8123571  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 39003876 - 39003952
Alignment:
Q  194 ggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacct 270  Q
    ||||||||||| | |||||||| || |||||||||||| |||||| |  |||| | |||||| ||||| ||||||||    
T  39003876 ggagtaatattaaatatgttagagtacacttgtcttatcgtgggtgtacatttacgtatataggcattatatgacct 39003952  T

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