View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10640_low_11 (Length: 284)

Name: NF10640_low_11
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10640_low_11
NF10640_low_11
[»] chr1 (2 HSPs)
chr1 (28-270)||(51760794-51761036)
chr1 (102-194)||(29277921-29278013)
[»] chr6 (1 HSPs)
chr6 (8-194)||(17718466-17718652)
[»] chr3 (2 HSPs)
chr3 (8-194)||(2550903-2551089)
chr3 (8-194)||(13846729-13846915)
[»] chr8 (1 HSPs)
chr8 (8-194)||(45355289-45355475)
[»] chr5 (3 HSPs)
chr5 (8-194)||(23760984-23761170)
chr5 (8-194)||(23826445-23826631)
chr5 (8-194)||(17038773-17038959)
[»] chr4 (2 HSPs)
chr4 (8-194)||(43601004-43601190)
chr4 (102-194)||(1153094-1153186)
[»] chr7 (1 HSPs)
chr7 (8-185)||(9241236-9241413)
[»] chr2 (1 HSPs)
chr2 (8-194)||(15514710-15514894)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 28 - 270
Target Start/End: Original strand, 51760794 - 51761036
Alignment:
Q  28 ataagaaatattattagaaattgagttcaataacacaatcaattaaatttgggataaagatagtaccnnnnnnncttaagtttctcatgttttgccttgt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||       |||||||||||||||||||||||||     
T  51760794 ataagaaatattattagaaattgagttcaataacacaatcaattaaatttaggataaacatagtacctttttttcttaagtttctcatgttttgccttgc 51760893  T
Q  128 gcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagacatctgattatattatttagcaataggctgaggac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51760894 gcttagctactttattcaaataatgttgtttatcctgattaaataacataatcaattttaaaagacatctgattatattatttagcaataggctgaggac 51760993  T
Q  228 atctgatttcatcaagtgttgatgattttactgatataaagtg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  51760994 atctgatttcatcaagtgttgatgattttactgatataaagtg 51761036  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 29278013 - 29277921
Alignment:
Q  102 cttaagtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29278013 cttaagtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 29277921  T

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Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 17718652 - 17718466
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacaca--atcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||       || |    
T  17718652 aagcaaagataattcatacaataagaa-tattattagaaattgagttcaataacacagaatcaattaaatttgggataaacatagtacctttttt-ctca 17718555  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718554 agtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 17718466  T

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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 2550903 - 2551089
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacacaa--tcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||       ||||    
T  2550903 aagcaaagataattcataaaataagaa-tattattagaaattgagttcaataacacaaaatcaattaaatttgggataaacatagtacctttttt-ctta 2551000  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2551001 agtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 2551089  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 13846729 - 13846915
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacacaa--tcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||       ||||    
T  13846729 aagcaaagataattcataaaataagaa-tattattagaaattgagttcaataacacaaaatcaattaaatttgggataaacatagtacctttttt-ctta 13846826  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13846827 agtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 13846915  T

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Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 45355475 - 45355289
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacacaa--tcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||  |||||||||||||||||||| ||||||||       ||||    
T  45355475 aagcaaagataattcataaaataagaa-tattattagaaattgagttcaataacataaaatcaattaaatttgggataaacatagtacctttttt-ctta 45355378  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45355377 agtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 45355289  T

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Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 23761170 - 23760984
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacacaa--tcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||| ||||| ||||||||       ||||    
T  23761170 aagcaaagataattcatacaataagaa-tattattagaaattcagttcaataacacaaaatcaattaaatttggaataaacatagtacctttttt-ctta 23761073  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23761072 agtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 23760984  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 23826631 - 23826445
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacacaa--tcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||| ||||| ||||||||       ||||    
T  23826631 aagcaaagataattcatacaataagaa-tattattagaaattcagttcaataacacaaaatcaattaaatttggaataaacatagtacctttttt-ctta 23826534  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23826533 agtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 23826445  T

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Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 17038773 - 17038959
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacacaa--tcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||| ||||||||  |||||||       ||||    
T  17038773 aagcaaagataatttatacaataagaa-tattattagaaattgagttgaataacacaaaatcaattaaattagggataaacttagtacctttttt-ctta 17038870  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17038871 agtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatccggattaaataatataatcaattttaaaagaca 17038959  T

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Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 43601004 - 43601190
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacacaa--tcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||  |||||||||||| ||||||| ||||||||       ||||    
T  43601004 aagcaaagataattcataaaataagaa-tattattagaaattgagttcaataacaaaaaatcaattaaatttaggataaacatagtacctttttt-ctta 43601101  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43601102 agtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 43601190  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 1153094 - 1153186
Alignment:
Q  102 cttaagtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153094 cttaagtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 1153186  T

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Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 9241413 - 9241236
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacacaa--tcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||       ||||    
T  9241413 aagcaaagataattcataaaataagaa-tattattagaaattgagttcaataacacaaaatcaattaaatttgggataaacatagtaccttttat-ctta 9241316  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattt 185  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  9241315 agtttctcatgttttgccttgcgcttagctgctttatccaaataatgttgtttatactgattaaataatataatcaattt 9241236  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 15514710 - 15514894
Alignment:
Q  8 aagcagagataattcatacaataagaaatattattagaaattgagttcaataacacaa--tcaattaaatttgggataaagatagtaccnnnnnnnctta 105  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||||  ||||||||||||||||||||  || |||        ||||    
T  15514710 aagcaaagataattcatacaa-aagaa-tattattagaaattgaattcaataacacaaaatcaattaaatttgggataaacttaatac-attttttctta 15514806  T
Q  106 agtttctcatgttttgccttgtgcttagctactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 194  Q
    |||||||||| |||||||||| |||||||| ||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  15514807 agtttctcatattttgccttgcgcttagctgctt-atccaaataatgttgtttctcctgattaaataatataattaattttaaaagaca 15514894  T

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