View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_low_19 (Length: 243)
Name: NF10640_low_19
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 27195364 - 27195319
Alignment:
| Q |
123 |
agaaatgcaaaccaactgtctttccctcaagctcagatataagtat |
168 |
Q |
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| T |
27195364 |
agaaatgcaaaccaactgtctttccctcaagctcagagataggtat |
27195319 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 27210608 - 27210561
Alignment:
| Q |
121 |
aaagaaatgcaaaccaactgtctttccctcaagctcagatataagtat |
168 |
Q |
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| T |
27210608 |
aaagaaatgcaaaccaactgtctttccctcaatctcagagataggtat |
27210561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 27195023 - 27194983
Alignment:
| Q |
185 |
ttcatcaagcaatgcaagatgaggaatgccgtttacatgaa |
225 |
Q |
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| T |
27195023 |
ttcatcaagcaatgcaagatgaggaattccgttgacatgaa |
27194983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 27210251 - 27210212
Alignment:
| Q |
186 |
tcatcaagcaatgcaagatgaggaatgccgtttacatgaa |
225 |
Q |
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| T |
27210251 |
tcatcgagcaatgcaagatgaggaatgccttttacatgaa |
27210212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 27210712 - 27210684
Alignment:
| Q |
21 |
aagggtataaacacgacctcaaagttctc |
49 |
Q |
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| T |
27210712 |
aagggtataaacacgacctcaaagttctc |
27210684 |
T |
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