View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_low_22 (Length: 242)
Name: NF10640_low_22
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 40708254 - 40708483
Alignment:
| Q |
11 |
caaaggtcattgtcttttctatgaatgatgtttgacccaataaattttcactttaggttgtagtttaatttcaattatttggaaggtattttatg----- |
105 |
Q |
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| T |
40708254 |
caaaggtcattgtcttttctatgaatgatgtttgacccaataaattttcactttaggttgtagtttaatttcaattagttggaaggtatattatgtactt |
40708353 |
T |
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| Q |
106 |
--------gatcgtgtacctcttatacactctaatttactagtgaatgaaatttttataaccaattaattagagataaatatttgtctccactatggttt |
197 |
Q |
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| T |
40708354 |
gttatatggatcgtgtacctcttatacactctaatttactagtgaatgaaatttttataaccaattaattagagataaatatttgtctccactatggttt |
40708453 |
T |
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| Q |
198 |
ctatagtaaattatagtgaggcaacaatat |
227 |
Q |
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| T |
40708454 |
ctataataaattatagtgaggcaacaatat |
40708483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 40723018 - 40723118
Alignment:
| Q |
112 |
gtacctcttatacactctaatttactagtgaatgaaatttttataaccaattaattagagataaatatttgtctccactatggtttctatagtaaattat |
211 |
Q |
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| T |
40723018 |
gtacctcttgtacgct-taatttactcttgaatgaaaatcttataaccaattaattagagacaaatatatgtctccattgcggtttatataataaattat |
40723116 |
T |
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| Q |
212 |
ag |
213 |
Q |
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|| |
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| T |
40723117 |
ag |
40723118 |
T |
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