View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10640_low_24 (Length: 241)

Name: NF10640_low_24
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10640_low_24
NF10640_low_24
[»] chr1 (5 HSPs)
chr1 (142-225)||(16578453-16578536)
chr1 (1-80)||(16578598-16578677)
chr1 (1-80)||(32803218-32803297)
chr1 (26-75)||(32809703-32809752)
chr1 (1-38)||(35465535-35465572)
[»] chr8 (1 HSPs)
chr8 (13-61)||(13212844-13212892)
[»] chr5 (1 HSPs)
chr5 (13-61)||(3332386-3332434)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 16578536 - 16578453
Alignment:
Q  142 ttggtttcgttgatgaaaagttcggtgtggggacgtttgttcataaaaccaggtggattacctgacgggtggtggggatgatcc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16578536 ttggtttcgttgatgaaaagttcggtgtggggacgtttgttcataaaaccaggtggattacctgacgggtggtggggatgatcc 16578453  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 16578677 - 16578598
Alignment:
Q  1 gttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16578677 gttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgc 16578598  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 32803218 - 32803297
Alignment:
Q  1 gttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgc 80  Q
    ||||| ||||| |||||||||||| ||||||| || || |||||||||||||||||||||||||| |||| ||| |||||    
T  32803218 gttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgc 32803297  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 32809703 - 32809752
Alignment:
Q  26 tgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttca 75  Q
    ||||||| || || |||||||||||||||||||||||||| |||||||||    
T  32809703 tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttca 32809752  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35465535 - 35465572
Alignment:
Q  1 gttacgaagattggtggttttggtttgttttttgaacc 38  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  35465535 gttatgaatattggtggttttggtttgttttttgaacc 35465572  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 13212844 - 13212892
Alignment:
Q  13 ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc 61  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  13212844 ggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc 13212892  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 3332386 - 3332434
Alignment:
Q  13 ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc 61  Q
    |||||||||||||||||||| || || | ||||||||||||||||||||    
T  3332386 ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc 3332434  T

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