View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10640_low_26 (Length: 226)

Name: NF10640_low_26
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10640_low_26
NF10640_low_26
[»] chr6 (6 HSPs)
chr6 (1-226)||(11169892-11170117)
chr6 (1-226)||(11208714-11208939)
chr6 (1-127)||(11275276-11275402)
chr6 (58-130)||(11196117-11196189)
chr6 (85-134)||(11155697-11155746)
chr6 (81-141)||(11132411-11132471)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11169892 - 11170117
Alignment:
Q  1 atgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttgtcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11169892 atgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttgtcct 11169991  T
Q  101 tagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattggtaggaatcgtggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11169992 tagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattggtaggaatcgtggt 11170091  T
Q  201 attcctaggaattattacgctcatga 226  Q
    |||||||||||||||||||| |||||    
T  11170092 attcctaggaattattacgcccatga 11170117  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11208714 - 11208939
Alignment:
Q  1 atgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttgtcct 100  Q
    ||||||||||||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  11208714 atgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctagcaagttgttgtcct 11208813  T
Q  101 tagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctattggtaggaatcgtgg 199  Q
    ||||| ||||||||||||||||||||||   ||| || | |||| ||| |||||  ||||   |||||| ||   | |||| ||||||||||||||||||    
T  11208814 tagttgtttgcctctcaccctcataaacggaaattgata-aactattttggttgggttcactggtggtgtatacatcttccatattggtaggaatcgtgg 11208912  T
Q  200 tattcctaggaattattacgctcatga 226  Q
    |||||||||||||||||||||||||||    
T  11208913 tattcctaggaattattacgctcatga 11208939  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 11275276 - 11275402
Alignment:
Q  1 atgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttgtcct 100  Q
    |||||||||| || |||||||||||||||||| || ||  ||||| ||  ||||| ||||||||||||||||  ||||| ||||||||||||||||||||    
T  11275276 atgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttgtcct 11275375  T
Q  101 tagttatttgcctctcaccctcataaa 127  Q
    ||||| ||| |||||||||||||||||    
T  11275376 tagttgttttcctctcaccctcataaa 11275402  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 11196117 - 11196189
Alignment:
Q  58 ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat 130  Q
    ||||||||||| ||| ||||   ||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  11196117 ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat 11196189  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 11155697 - 11155746
Alignment:
Q  85 agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat 134  Q
    ||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  11155697 agcaagttgttttccctagttattttcctctcaccttcataaacatgaat 11155746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 11132411 - 11132471
Alignment:
Q  81 tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaata 141  Q
    |||||||||||||||  || |||||||||  || |||||||| |||||||||||| |||||    
T  11132411 tcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaata 11132471  T

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