View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10640_low_27 (Length: 224)

Name: NF10640_low_27
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10640_low_27
NF10640_low_27
[»] chr8 (5 HSPs)
chr8 (17-76)||(15552356-15552415)
chr8 (35-76)||(1236251-1236292)
chr8 (35-76)||(31498582-31498623)
chr8 (35-72)||(17915107-17915144)
chr8 (35-72)||(21356094-21356131)
[»] chr7 (1 HSPs)
chr7 (17-76)||(28164888-28164947)
[»] chr1 (3 HSPs)
chr1 (17-76)||(39487612-39487671)
chr1 (35-72)||(931796-931833)
chr1 (160-200)||(39487732-39487772)
[»] chr5 (2 HSPs)
chr5 (35-76)||(5540211-5540252)
chr5 (35-76)||(36836783-36836824)
[»] chr4 (3 HSPs)
chr4 (35-76)||(34413257-34413298)
chr4 (35-76)||(49228259-49228300)
chr4 (35-76)||(13938863-13938904)
[»] chr6 (1 HSPs)
chr6 (35-76)||(647892-647933)
[»] chr2 (2 HSPs)
chr2 (35-76)||(32742202-32742243)
chr2 (35-76)||(37904585-37904626)
[»] chr3 (1 HSPs)
chr3 (35-76)||(43424109-43424150)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 15552415 - 15552356
Alignment:
Q  17 agacattaatgagatatatttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    ||||||||||||| |   |||||||||||||||||||||||||| |||||||||||||||    
T  15552415 agacattaatgaggtgggtttaatgagggtaaacttggaattgttgcatttaataggttc 15552356  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 1236251 - 1236292
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  1236251 tttaatgagggtaaatttggaattgtgacatttaataggttc 1236292  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 31498582 - 31498623
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  31498582 tttaatgagggtaaactttgaattgtgacatttaataggttc 31498623  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 17915144 - 17915107
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaatag 72  Q
    |||||||||||||||| | |||||||||||||||||||    
T  17915144 tttaatgagggtaaacctagaattgtggcatttaatag 17915107  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 21356131 - 21356094
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaatag 72  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  21356131 tttaatgagggtaaatttgaaattgtggcatttaatag 21356094  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 28164888 - 28164947
Alignment:
Q  17 agacattaatgagatatatttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    ||||||||||||| |  ||||||||||||||||  |||||||||||||||||||||||||    
T  28164888 agacattaatgaggtggatttaatgagggtaaaactggaattgtggcatttaataggttc 28164947  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 39487612 - 39487671
Alignment:
Q  17 agacattaatgagatatatttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    ||||||||||||||| | ||||||||||||||| |||||||| || ||||||||||||||    
T  39487612 agacattaatgagatgtgtttaatgagggtaaatttggaattctgacatttaataggttc 39487671  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 931833 - 931796
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaatag 72  Q
    |||||||||||||||||| |||||||||||||||||||    
T  931833 tttaatgagggtaaacttagaattgtggcatttaatag 931796  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 39487732 - 39487772
Alignment:
Q  160 attggtatgttgatgagtctaaccggatgatttgtgagctt 200  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  39487732 attggtatgttgatgagtctaactgaatgatttgtgagctt 39487772  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 5540211 - 5540252
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  5540211 tttaatgtgggtaaacttggaattgtggcatttaataggttc 5540252  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 36836824 - 36836783
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  36836824 tttagtgagggtaaacttggaattgtggcatttaataggttc 36836783  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 34413298 - 34413257
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  34413298 tttaatgaggataaacttggaattgtggcatttaataggttc 34413257  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 49228300 - 49228259
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  49228300 tttaatgagggtaaaattggaattgtggcatttaataggttc 49228259  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 13938863 - 13938904
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  13938863 tttaatgagggtaaacttgggatagtggcatttaataggttc 13938904  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 647892 - 647933
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  647892 tttaatgagggtaaacatggaatagtggcatttaataggttc 647933  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 32742202 - 32742243
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  32742202 tttaatgagggtaaacttgaaatagtggcatttaataggttc 32742243  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 37904626 - 37904585
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  37904626 tttaatgagggtaaacttaaaattgtggcatttaataagttc 37904585  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 43424109 - 43424150
Alignment:
Q  35 tttaatgagggtaaacttggaattgtggcatttaataggttc 76  Q
    |||||| |||||||| ||||||||||| ||||||||||||||    
T  43424109 tttaattagggtaaaattggaattgtgtcatttaataggttc 43424150  T

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