View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_low_28 (Length: 217)
Name: NF10640_low_28
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 1900445 - 1900284
Alignment:
| Q |
1 |
ccctcttaacgactttgaacaactttcttcacttgtcttgtatagaagtcattgcagtcttccggtcatcttattgtatgcatattgtatataggtcatt |
100 |
Q |
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| T |
1900445 |
ccctcttaacaacgttgaacaactttcttcacttgtcttttatagaagtcattgcagtcttccggtcatcttattgtatgcataccgtatataggtcatt |
1900346 |
T |
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| Q |
101 |
gaatggatgcatcacaacatccttatttccgtgtcttttatctttttctcacgattataatt |
162 |
Q |
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| T |
1900345 |
gaatggatgcatcacaatatccttatttccgtgtcttttatctttttctcatgaatataatt |
1900284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 1909891 - 1909730
Alignment:
| Q |
1 |
ccctcttaacgactttgaacaactttcttcacttgtcttgtatagaagtcattgcagtcttccggtcatcttattgtatgcatattgtatataggtcatt |
100 |
Q |
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| T |
1909891 |
ccctcttaacaacgttgaacaactttcttcacttgtcttttatagaagtcattgcagtcttccggtcatcttattgtatgcataccgtatataggtcatt |
1909792 |
T |
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| Q |
101 |
gaatggatgcatcacaacatccttatttccgtgtcttttatctttttctcacgattataatt |
162 |
Q |
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| T |
1909791 |
gaatggatgcatcacaatatccttatttccgtgtcttttatctttttctcatgaatataatt |
1909730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 2934866 - 2935019
Alignment:
| Q |
1 |
ccctcttaacgactttgaacaactttcttcacttgtcttgtatagaagtcattgcagtcttccggtcatcttattgtatgcatattgtatataggtcatt |
100 |
Q |
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| T |
2934866 |
ccctcttaacaatgttgaacaattttcttcacttgtcttgtatagaagtcattgcagttttccagtcatctcattgtatgcatactgtatataggtcatt |
2934965 |
T |
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| Q |
101 |
gaatggatgcatcacaacatccttatttccgtgtcttttatctttttctcacga |
154 |
Q |
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| T |
2934966 |
gaatggatgcatcacaacatccttatttccatatccgttatctttttctcacga |
2935019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 1893501 - 1893335
Alignment:
| Q |
50 |
cattgcagtcttccggtcatcttattgtatgcatattgtatataggtcattgaatggatgcatcacaacatccttatttccgtgtcttttatctttttct |
149 |
Q |
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| T |
1893501 |
cattgcagttttccagtcatctcattgtacgcatactgtatataggtcattgaatggatgcatcacaacatccttatttccatatcctttatctttttct |
1893402 |
T |
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| Q |
150 |
cacgattataatttttgtgaaaaaattagtagaaatatgtggatgggtggattaggtgtgttgcgtaa |
217 |
Q |
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| T |
1893401 |
catgaatataatttttgtgaaaaaattagtagaaatatgttgat-ggtagtataggtgtgttgcgtaa |
1893335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 1902947 - 1902781
Alignment:
| Q |
50 |
cattgcagtcttccggtcatcttattgtatgcatattgtatataggtcattgaatggatgcatcacaacatccttatttccgtgtcttttatctttttct |
149 |
Q |
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||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
1902947 |
cattgcagttttccagtcatctcattgtacgcatactgtatataggtcattgaatggatgcatcacaacatccttatttccatatcctttatctttttct |
1902848 |
T |
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| Q |
150 |
cacgattataatttttgtgaaaaaattagtagaaatatgtggatgggtggattaggtgtgttgcgtaa |
217 |
Q |
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| T |
1902847 |
catgaatataatttttgtgaaaaaattagtagaaatatgttgat-ggtagtataggtgtgttgcgtaa |
1902781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 2935019 - 2935063
Alignment:
| Q |
172 |
aaattagtagaaatatgtggatgggtggattaggtgtgttgcgtaa |
217 |
Q |
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| T |
2935019 |
aaattagtagaaatatgttgatgg-tggattaggtgtgttgcgtaa |
2935063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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