View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_low_29 (Length: 204)
Name: NF10640_low_29
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_low_29 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 51759792 - 51759996
Alignment:
| Q |
1 |
tcacgagtaataggcctgaaatatagattaattaccaaacttcagctactcgagactctagttatgttattagaatttgaagacaataggaaaatttaac |
100 |
Q |
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| T |
51759792 |
tcacgagtaataggcctgaaatatagattaattaccaaacttcagctactcgagactctagttatgttattagaatttgaacacaatagg-aaatttaac |
51759890 |
T |
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| Q |
101 |
accaaatcttttatctaaaaga--aaggaaatttaataattaccattattcaaacggtgaagcattccatcaatttcggggtcagtctattcaatcaaac |
198 |
Q |
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| T |
51759891 |
accaaatcttttatctaaaagaacaaggaaatttaataattaccattattcaaactgtgaagcattccaccaattctggggtcaacctattcgatcaaac |
51759990 |
T |
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| Q |
199 |
acacca |
204 |
Q |
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|||||| |
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| T |
51759991 |
acacca |
51759996 |
T |
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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 6685199 - 6685283
Alignment:
| Q |
8 |
taataggcctgaaatatagattaattaccaaacttcagctactcgagactctagttatgttattagaatttgaagacaataggaa |
92 |
Q |
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| T |
6685199 |
taataggtctgaaataaagcttaattaccaaacttcagctactcgagactctagttatgttattagaatttgaacacaataggaa |
6685283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 19747518 - 19747585
Alignment:
| Q |
109 |
ttttatctaaaaga--aaggaaatttaataattaccattattcaaacggtgaagcattccatcaattt |
174 |
Q |
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| T |
19747518 |
ttttatctaaaagagcaaggcaattttaaaattaccattattcaaactgtaaagcattccatcaattt |
19747585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 9241469 - 9241421
Alignment:
| Q |
156 |
tgaagcattccatcaatttcggggtcagtctattcaatcaaacacacca |
204 |
Q |
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| T |
9241469 |
tgaagcattccaccaatcccggggtcagcctattcaatcaaacacacca |
9241421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 15514593 - 15514702
Alignment:
| Q |
96 |
ttaacaccaaatcttttatctaaaagaa--aggaaatttaataattaccattattcaaacggtgaagcattccatcaatttcggggtcagtctattcaat |
193 |
Q |
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| T |
15514593 |
ttaacatcaaat-ttttatctaaaagaataagacaatttaaaaattaacattattcaaactgtgaagcattccaccaatcctggagtcagcttattcaat |
15514691 |
T |
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| Q |
194 |
caaacacacca |
204 |
Q |
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|||| |||||| |
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| T |
15514692 |
caaatacacca |
15514702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 23615559 - 23615512
Alignment:
| Q |
156 |
tgaagcattccatcaatttcggggtcagtctattcaatcaaacacacc |
203 |
Q |
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| T |
23615559 |
tgaagcattccaccaatcccggggtcagcctattcaatcaaacacacc |
23615512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 23846955 - 23846908
Alignment:
| Q |
156 |
tgaagcattccatcaatttcggggtcagtctattcaatcaaacacacc |
203 |
Q |
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| T |
23846955 |
tgaagcattccaccaatcccggggtcagcctattcaatcaaacacacc |
23846908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 17038716 - 17038765
Alignment:
| Q |
155 |
gtgaagcattccatcaatttcggggtcagtctattcaatcaaacacacca |
204 |
Q |
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||||||||||||| |||| ||||| ||| |||||||||||||||||||| |
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| T |
17038716 |
gtgaagcattccaccaatctcgggaacagcctattcaatcaaacacacca |
17038765 |
T |
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