View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10640_low_3 (Length: 403)
Name: NF10640_low_3
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 103 - 322
Target Start/End: Original strand, 41342185 - 41342404
Alignment:
| Q |
103 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342185 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
41342284 |
T |
|
| Q |
203 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342285 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
41342384 |
T |
|
| Q |
303 |
caaaaagttatataatgaga |
322 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41342385 |
caaaaagttatataatgaga |
41342404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 41342449 - 41342488
Alignment:
| Q |
359 |
aaattaagtaagctttataactcaccttctctctgcttct |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41342449 |
aaattaagtaagctttataactcaccttctctcggcttct |
41342488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University