View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_low_4 (Length: 401)
Name: NF10640_low_4
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 41367644 - 41367299
Alignment:
| Q |
19 |
agtatcattttttaccaccattgaactttcaaaactaaatatagagcctaattgacgggaaacgggggaaagtgacatatgatcagctgctacttgattt |
118 |
Q |
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| T |
41367644 |
agtatcattttttaccaccattgaactttcaaaactaaatatagagcctaattgacgggaaacgggggaaagtgacatatgatcagctgctacttgattt |
41367545 |
T |
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| Q |
119 |
tgaattagaaggaagaaaggcactctccctcttgatgtgtttaattagaagaaagctcccttatcagtatatatctgaaagtgcaatatctgttgtgttc |
218 |
Q |
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| T |
41367544 |
tgaattagaaggaagaaaggcactctccctcttgatgtgtttaattagaagaaagctcccttatcagtatatatctgaaagtgcaatatctgttgtgttc |
41367445 |
T |
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| Q |
219 |
ctctgataccaagttttcattccaagcacaaccagtacctccatgttagcagatttttgccttggtgaatgatatgatgctaaatggaacctgaaaaatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41367444 |
ctctgataccaagttttcattccaagcacaaccagtacctccatgttagcagatttttgccttggtgaatgatatgatgctaaatggaacctgaaaaatg |
41367345 |
T |
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| Q |
319 |
aataactaaacgattataaatatgttaatctattaaaaacaatgta |
364 |
Q |
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|||||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
41367344 |
aataactaaatgaatataaatatattaatctattaaaaacaatgta |
41367299 |
T |
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