View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_low_6 (Length: 360)
Name: NF10640_low_6
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 36202257 - 36202486
Alignment:
| Q |
20 |
gtattgattccattcttccaacaatttagtggcatcaatgttattatgttttatgcacctgtgttttttaattccattgggtttaaggatgatgctgccc |
119 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||| | | |
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| T |
36202257 |
gtattgataccattcttccaacaatttacaggcatcaatgttatcatgttttatgcacctgtgctatttaattccattgggtttaaggacgatgcttcac |
36202356 |
T |
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| Q |
120 |
ttatgtctgctgtcatcactggtgttgttaatgttgctgctacttgtgtctcaatttatggagttgataagtggggtaggagagcccttttccttgaagg |
219 |
Q |
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||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36202357 |
ttatgtcggctgtcatcaccggtgttgttaatgttgttgctacttgtgtctcaatttatggagttgataagtggggtaggagagcccttttccttgaagg |
36202456 |
T |
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| Q |
220 |
tggagttcaaatgatcatatgtcaggtaac |
249 |
Q |
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||| | ||||||| ||||||| |||||||| |
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| T |
36202457 |
tggtgctcaaatgctcatatgccaggtaac |
36202486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 35922800 - 35922572
Alignment:
| Q |
21 |
tattgattccattcttccaacaatttagtggcatcaatgttattatgttttatgcacctgtgttttttaattccattgggtttaaggatgatgctgccct |
120 |
Q |
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||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||||||| | |||| ||| |||||||| |||||||||||||||| |
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| T |
35922800 |
tattgattccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttgaggatgatgctgccct |
35922701 |
T |
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| Q |
121 |
tatgtctgctgtcatcactggtgttgttaatgttgctgctacttgtgtctcaatttatggagttgataagtggggtaggagagcccttttccttgaaggt |
220 |
Q |
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| T |
35922700 |
tatgtcatctgtgataactggcgttgttaatgcttttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggt |
35922601 |
T |
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| Q |
221 |
ggagttcaaatgatcatatgtcaggtaac |
249 |
Q |
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|| |||||||| |||| ||||||||||| |
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| T |
35922600 |
ggccttcaaatgctcatttgtcaggtaac |
35922572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 35490263 - 35490208
Alignment:
| Q |
26 |
attccattcttccaacaatttagtggcatcaatgttattatgttttatgcacctgt |
81 |
Q |
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|||||||||||||||||| | | || ||||||||||| ||||||||||||||||| |
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| T |
35490263 |
attccattcttccaacaactcaccggaatcaatgttatcatgttttatgcacctgt |
35490208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 21559725 - 21559684
Alignment:
| Q |
298 |
atacacctctcatgtacacccccatgtgtcaggtgtatttta |
339 |
Q |
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| T |
21559725 |
atacacctcttatgtacacccccatgtgttaggggtatttta |
21559684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 14573159 - 14573118
Alignment:
| Q |
298 |
atacacctctcatgtacacccccatgtgtcaggtgtatttta |
339 |
Q |
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|||||||||| |||||||||||||||||| ||| |||||||| |
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| T |
14573159 |
atacacctcttatgtacacccccatgtgttaggggtatttta |
14573118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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