View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_low_8 (Length: 338)
Name: NF10640_low_8
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 41750222 - 41750543
Alignment:
| Q |
1 |
aattaagagtgtaggaaatatgcatcataagcgttgacatgat---aatgcactaaaattgcacttttaattagaaatatcaaatat--atataaactga |
95 |
Q |
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| T |
41750222 |
aattaagagtgtaggaaatatgcatcataagcgttgacatgatgataatgcactaaaattgcacttttaattagaaatatcaaatatatatataaattga |
41750321 |
T |
|
| Q |
96 |
tcgttcgatagtgaaaaaacaatacgtctaattgagcattatttctactttaaggatacacatgaatgaacatgtgcatttaaggtacgaacgattagat |
195 |
Q |
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| T |
41750322 |
tcgttcgatagtgaaaaaacaatacgtctaattgagcattatttctactttaaggatacacatgaatgaacatgtgcatttaaggtacgaacgattagat |
41750421 |
T |
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| Q |
196 |
gaatgcatggttggaaaaactgataggctaaattcaaataaaaagaaagataagatttatttactgtctcattactcacac---atgtatgaagattata |
292 |
Q |
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| T |
41750422 |
ga----atggttggaaaaactgataggctaaattcaaataaaaagaaagataagattta-ttactctctcattacacacacaatatgtatgaagattata |
41750516 |
T |
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| Q |
293 |
gatgaaagattggataaacggtcgata |
319 |
Q |
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||||||||||||||||||||||||||| |
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| T |
41750517 |
gatgaaagattggataaacggtcgata |
41750543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41756894 - 41756936
Alignment:
| Q |
1 |
aattaagagtgtaggaaatatgcatcataagcgttgacatgat |
43 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
41756894 |
aattaagtgtgtaggaaatatgcatcataagcgctgacatgat |
41756936 |
T |
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