View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10640_low_9 (Length: 324)
Name: NF10640_low_9
Description: NF10640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10640_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 27774756 - 27775064
Alignment:
| Q |
1 |
gttgcaggagtagcagtactctcctcagctgagtcgcccaatttcacatcatgtactttctcaggtaagcaaacgggaagggagtcatccctcagcatct |
100 |
Q |
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| T |
27774756 |
gttgcaggagtagcagtactctcctcagctgagtcgcccaatttcacatcatgtactttctcaggtaagcaaacaggaagggagtcatccctcagcatct |
27774855 |
T |
|
| Q |
101 |
gcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttataatttgtagtaaaaaacaacaatagcatgtctgtttgatataattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774856 |
gcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttatcatttgtagtaaaaaacaacaatagcatgtctgtttgatataattg |
27774955 |
T |
|
| Q |
201 |
aaaacaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgtagaagata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27774956 |
aaaacaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgtaaaagata |
27775055 |
T |
|
| Q |
301 |
aatgatgtc |
309 |
Q |
| |
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||||||||| |
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| T |
27775056 |
aatgatgtc |
27775064 |
T |
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