View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_high_1 (Length: 441)
Name: NF10641_high_1
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 9560942 - 9560514
Alignment:
| Q |
13 |
cagatcacattgtaccacaaagcaggtcaaccataaaatagacaaaaaacaacatcaaaatattttcatacattacatacactttacctatacatcacca |
112 |
Q |
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| T |
9560942 |
cagatcacattgtaccacaaagcaggtcaaccataaaatagacaaaaaacaacatcaaaatattttcatacattacatacactttacctatacaacacca |
9560843 |
T |
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| Q |
113 |
atcctttagatcagattgaagacatgtctggtatccgacatgtgttggtgtcaaacacatacaagacac------ttta-ct---tatattcaaccactt |
202 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || || ||||||||| ||||| |
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| T |
9560842 |
atacttcagatcagattgaagacatgtctggtatccgacacgtgttggtgtcaaacacatacaagacacgacatatgtagctatctatattcaatcactt |
9560743 |
T |
|
| Q |
203 |
ttgttttttcaaa-tattaccagtat--cacagtctcgtgtgccgtgtctgatgtatgtgtctcttagctcctcaccaaaaatcagctaagcgttttagc |
299 |
Q |
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||||||||||||| |||||||||||| |||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9560742 |
ttgttttttcaaattattaccagtatcacacactgtcgtgtgccgtgtccgatgtctgtgtctcttagctcctcaccaaaaatcagctaagcgttttagc |
9560643 |
T |
|
| Q |
300 |
atttacataaccataactatannnnnnnnnnnnnctnnnnnnncactatttaaggnnnnnnnnnnnncacattccaagttccaacaaccataactgaata |
399 |
Q |
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||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9560642 |
atttacataaccataactatattttttcttttttctaaaaaaacactatttaaggaaaaataaaaaacacattccaagttccaacaaccataactgaata |
9560543 |
T |
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| Q |
400 |
tctaccacaacaaccaataaccatgcatc |
428 |
Q |
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|||| ||||||| |||||||||||||||| |
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| T |
9560542 |
tctaacacaacacccaataaccatgcatc |
9560514 |
T |
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