View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_high_10 (Length: 238)
Name: NF10641_high_10
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 54646741 - 54646531
Alignment:
| Q |
17 |
tatatgtgccacaatacacgcccctcnnnnnnncccaaacaccaaaaccacatttgtgtggtgaaattcctagtcatgctagaatatatacggactccca |
116 |
Q |
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| T |
54646741 |
tatatgtgccacaatacacgcccctcaaaaaaacccaaacaccaaaaccacatttgtgtggtgaaattcctagtcatgctagaatatatacggactccca |
54646642 |
T |
|
| Q |
117 |
aagctaatttcgtctaataattacttatttgacattgccagttcggaccgttgtaggtaatatcctttctgattcacatttctttttatcattttctgct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
54646641 |
aagctaatttcgtctaataattacttatttgacattgccagttcggatcgttgtaggtaatatcctttccgattcacatttctttttatcactttctgct |
54646542 |
T |
|
| Q |
217 |
gttttcttcat |
227 |
Q |
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||||||||||| |
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| T |
54646541 |
gttttcttcat |
54646531 |
T |
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