View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10641_low_13 (Length: 336)
Name: NF10641_low_13
Description: NF10641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10641_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 11226582 - 11226889
Alignment:
| Q |
14 |
agatggaatgagaataattatttaattatatagacggnnnnnnnnn-ttaatcaaagtaataaattttttacatttcttgatatgtgtaataagttaaaa |
112 |
Q |
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| T |
11226582 |
agatggaatgagaataattatttaattatatagacgggaaaaaaaaattaatcaaagtaataaattttttacatttcttgatatgtgtaataagttaaaa |
11226681 |
T |
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| Q |
113 |
atgaaaactaaaaagtaatagatttaatatttgcacgatttactttttatttcattcatcccataatatttgtcaacttttcaaattctttcaaaaatat |
212 |
Q |
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| T |
11226682 |
atgaaaactaaaaagtaatagatgtagtatttgcacgatttactttttatttcattcatctcataatatttgtcaactattcaaattcttttaaaaatat |
11226781 |
T |
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| Q |
213 |
tatttgtcaactttgcaaataaaatgtatcccaaaaacaaagtcactttaagttttcaagtttaatttagatatttttgtaattgtatcttctaattaat |
312 |
Q |
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| T |
11226782 |
tttttgtcaactttgcaaataaaatgtatcccaaaaacaaagtcacattaagttttcaagtttaatttagatatttttgtaattgtatcctctaattaat |
11226881 |
T |
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| Q |
313 |
gcaatttt |
320 |
Q |
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|||||||| |
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| T |
11226882 |
gcaatttt |
11226889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 11237118 - 11237204
Alignment:
| Q |
80 |
tttacatttcttgatatgtgtaataagttaaaaatgaaaactaaaaagtaatagatttaatatttgcacgatttactttttatttcattcat |
171 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||| ||||||| || |||||||||| ||||| || ||||||||||||| |
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| T |
11237118 |
tttacatttcttcatatgtgtaataagttaaaaatgacaactataaagtaacag-----atatttgcacaatttatttattatttcattcat |
11237204 |
T |
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